Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1863 |
Symbol | |
ID | 4173048 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 2254044 |
End bp | 2256389 |
Gene Length | 2346 bp |
Protein Length | 781 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638054872 |
Product | TonB-dependent receptor |
Protein accession | YP_661437 |
Protein GI | 109898182 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.150075 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTAAGC ATGCTGACAT TCATCGAAAA TGCCGTCTTT CTGCCTTAAT TGACGAGAGT AGTCATACTA AAGGAGGAAA GAATAAAAAC CAGGTGAGCA ATAGCATAAA ACATACATTA TCGAATACTT TGAGAACTGT GATGTTTCGA GAGTCAGTTA AAAAAAGAAT CCCCGTTTTT CAGCTTTCCA TGCTGGCTGT TACCAGCTTG GTTGCAGCGA GTATCGCCGA AGCCAAAGCT GCCGAGGCAA ATACTGCCAA AGCCAATATG TTCAAAGAGG ACCGGTCTGA GTCACAGGTT ACAACGACTG ATATATCTGA TGTCATTGTT GTGACAGGCA CGCGTCAAGC GGAAAACCTA TTAACACTGA CTGGTAATTT GGCGCGCATC AATCGCCAAG ATATTCAAAC GGTAAGCTCG GTTTATCCAA GCGATCTACT TAATCGCGCG AGTGGAGTGT ATGTACAAGC CAATAATGGC ATGGAGTCTT TGCCTTCTTT GCGCTCTCCC GTACTGACCG GACCGGGTGC AGGGGGGGCT TTTTTAATTT TAGAAGATGG CATTGCAACA CGTGCAGCAG GTTTTGCAAA TAACAACGGC TTATCAGAGC TTAACTTAGC ACAAGCACAA GAAGTGGATA TCGTACGTGG CCCAGCGAGC GCGATTTATG GGTCAAATGC GGTTCACGGT GTGGTGAATG TGATTAATCA AGCGGTACGT GACGGCGGGG ACGTATCTTT GTTACTTGGG CCAAACGAGC ACTATCAAGT GCAAGGTACT CTGGGCAATG ATTTTGGTGC ACACGGCTTA AGCATTAATA CGCAATTAAT AGACAATGGC GGCTACCAAG ACGACAGTGA TTTCACGTCA GCCAAAGTGG GGCTGCGTCA TGAATACCGT GATGATCTCA ACGCGATAAC GACCAGTGTT GCGGGCTTCG TACTTGACCA AAATACCGCG GGTTTTATTG CCTCTGGCGA CAATGGGGAA GGTTGCTTTG AATCTACTTA CGCAGATGAC CGCTTGTTTA AAGACACCCA AGCAATGGAA AAAAACTGCG AAGACGACGC CTACCGAAAA TGGTCATCAA TGCGTGTTGC GAGTAAGTGG CAACGTACTT TGTCTGATGA CAGATATTTT GTGCTTACGC CTTACGTTCG AACGAATGAT ATGGAGTTTC GCCAGCATTA CTTACCCTCT GAAGCGATAG AAGAAAATAG CCACTCCAGT TTTGGATTGA CCAGTAGTTA TCATTGGCAA TTTGACCCGC GCCTCGCCCT TGTTATGGGG GCTGATGCAG AGTGGACTTC AGGCGAGCTC ACTGAAACCC AACAAAAGGC CAGTACCTTT AGCTTTGGTA AAGCGCGCCA GCAAGGTGTG CATTACGACT ATGAGGTTGA TGTGTTGACG TTAGCTCCTT ATGTTCAAGC CGACTGGCAA TACAGTCACG CGTTGCGAAT GTCTGCCAGT GTGCGTTTTG ATAGTACCCA TTACGATTAC AAGAACAGGC TTGCTGATGG AACCACACAG GCTGACGGCA GCCCATGTGT TAATGGTAAC AATGAGCCTG TGGCATGTTT GTATCAACGC CCGGCTGACA GCAAAGATGA TTTCGATAAC GTCAGCAGCA AGATAGGGTT TAATTATTTG ATGAACGAGA GCGTCGCGCT TTTTGCTGAT TGGTCTCAGG GATTCAGAGC ACCGCAGACG ACCGACTTGT ACCGAATTCA AAACCAGCAA GTAGCAGGAC AAATTGAATC AGAAGAAATT CGGAGCCAAG AGGTTGGGGT AAGAGGCTTA GCACTTGATA TGAACTTTGA GCTGGTGGCT TTTTATATGA CTAAAGATCA CTTCTTCTTC AGAGATGATG ATGGCCTGAA TGTAACTGAT GCTGAAACGT CTCACAAAGG CGTGGAAGTG GGGCTTGATT ATCCAATACT TAGTAACGTA TCTATTGCGG TTAATTACAC CTACGCGATT CACCAATACG AATCAGAACA TGCCAATAGC GGTGTACTGA AAGGGAACGA CATTGATACG GCTCCACGTC AGTTGGGCAA TGTGCGTCTC GCTTGGCAGC CCACTGAAGA CTCATCGTTG GAGCTCGAAT GGGCGCACGT GGGTAGTTAC TACCTAGATC CATCGAATGA ACATGAATAC CAAGGGCACA ATTTGTTGCA ACTTCGTGGT CAATTTTCGC TGACTGATAA AGTGCGTCTT TTGGCGCGAC TAGAGAATGT ACTAGACGAG CGATATGCCA GTCGCGCAGA TTATGCGTTT GGCTCTTATC GCTACTTTGG AGGCCAACCC AGAGCGATTC ATTTGGGCAT TGAAGCAAGA TTTTAA
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Protein sequence | MTKHADIHRK CRLSALIDES SHTKGGKNKN QVSNSIKHTL SNTLRTVMFR ESVKKRIPVF QLSMLAVTSL VAASIAEAKA AEANTAKANM FKEDRSESQV TTTDISDVIV VTGTRQAENL LTLTGNLARI NRQDIQTVSS VYPSDLLNRA SGVYVQANNG MESLPSLRSP VLTGPGAGGA FLILEDGIAT RAAGFANNNG LSELNLAQAQ EVDIVRGPAS AIYGSNAVHG VVNVINQAVR DGGDVSLLLG PNEHYQVQGT LGNDFGAHGL SINTQLIDNG GYQDDSDFTS AKVGLRHEYR DDLNAITTSV AGFVLDQNTA GFIASGDNGE GCFESTYADD RLFKDTQAME KNCEDDAYRK WSSMRVASKW QRTLSDDRYF VLTPYVRTND MEFRQHYLPS EAIEENSHSS FGLTSSYHWQ FDPRLALVMG ADAEWTSGEL TETQQKASTF SFGKARQQGV HYDYEVDVLT LAPYVQADWQ YSHALRMSAS VRFDSTHYDY KNRLADGTTQ ADGSPCVNGN NEPVACLYQR PADSKDDFDN VSSKIGFNYL MNESVALFAD WSQGFRAPQT TDLYRIQNQQ VAGQIESEEI RSQEVGVRGL ALDMNFELVA FYMTKDHFFF RDDDGLNVTD AETSHKGVEV GLDYPILSNV SIAVNYTYAI HQYESEHANS GVLKGNDIDT APRQLGNVRL AWQPTEDSSL ELEWAHVGSY YLDPSNEHEY QGHNLLQLRG QFSLTDKVRL LARLENVLDE RYASRADYAF GSYRYFGGQP RAIHLGIEAR F
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