| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1863 |
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| Symbol | |
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| ID | 4173048 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2254044 |
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| End bp | 2256389 |
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| Gene Length | 2346 bp |
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| Protein Length | 781 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638054872 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_661437 |
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| Protein GI | 109898182 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.150075 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTAAGC ATGCTGACAT TCATCGAAAA TGCCGTCTTT CTGCCTTAAT TGACGAGAGT
AGTCATACTA AAGGAGGAAA GAATAAAAAC CAGGTGAGCA ATAGCATAAA ACATACATTA
TCGAATACTT TGAGAACTGT GATGTTTCGA GAGTCAGTTA AAAAAAGAAT CCCCGTTTTT
CAGCTTTCCA TGCTGGCTGT TACCAGCTTG GTTGCAGCGA GTATCGCCGA AGCCAAAGCT
GCCGAGGCAA ATACTGCCAA AGCCAATATG TTCAAAGAGG ACCGGTCTGA GTCACAGGTT
ACAACGACTG ATATATCTGA TGTCATTGTT GTGACAGGCA CGCGTCAAGC GGAAAACCTA
TTAACACTGA CTGGTAATTT GGCGCGCATC AATCGCCAAG ATATTCAAAC GGTAAGCTCG
GTTTATCCAA GCGATCTACT TAATCGCGCG AGTGGAGTGT ATGTACAAGC CAATAATGGC
ATGGAGTCTT TGCCTTCTTT GCGCTCTCCC GTACTGACCG GACCGGGTGC AGGGGGGGCT
TTTTTAATTT TAGAAGATGG CATTGCAACA CGTGCAGCAG GTTTTGCAAA TAACAACGGC
TTATCAGAGC TTAACTTAGC ACAAGCACAA GAAGTGGATA TCGTACGTGG CCCAGCGAGC
GCGATTTATG GGTCAAATGC GGTTCACGGT GTGGTGAATG TGATTAATCA AGCGGTACGT
GACGGCGGGG ACGTATCTTT GTTACTTGGG CCAAACGAGC ACTATCAAGT GCAAGGTACT
CTGGGCAATG ATTTTGGTGC ACACGGCTTA AGCATTAATA CGCAATTAAT AGACAATGGC
GGCTACCAAG ACGACAGTGA TTTCACGTCA GCCAAAGTGG GGCTGCGTCA TGAATACCGT
GATGATCTCA ACGCGATAAC GACCAGTGTT GCGGGCTTCG TACTTGACCA AAATACCGCG
GGTTTTATTG CCTCTGGCGA CAATGGGGAA GGTTGCTTTG AATCTACTTA CGCAGATGAC
CGCTTGTTTA AAGACACCCA AGCAATGGAA AAAAACTGCG AAGACGACGC CTACCGAAAA
TGGTCATCAA TGCGTGTTGC GAGTAAGTGG CAACGTACTT TGTCTGATGA CAGATATTTT
GTGCTTACGC CTTACGTTCG AACGAATGAT ATGGAGTTTC GCCAGCATTA CTTACCCTCT
GAAGCGATAG AAGAAAATAG CCACTCCAGT TTTGGATTGA CCAGTAGTTA TCATTGGCAA
TTTGACCCGC GCCTCGCCCT TGTTATGGGG GCTGATGCAG AGTGGACTTC AGGCGAGCTC
ACTGAAACCC AACAAAAGGC CAGTACCTTT AGCTTTGGTA AAGCGCGCCA GCAAGGTGTG
CATTACGACT ATGAGGTTGA TGTGTTGACG TTAGCTCCTT ATGTTCAAGC CGACTGGCAA
TACAGTCACG CGTTGCGAAT GTCTGCCAGT GTGCGTTTTG ATAGTACCCA TTACGATTAC
AAGAACAGGC TTGCTGATGG AACCACACAG GCTGACGGCA GCCCATGTGT TAATGGTAAC
AATGAGCCTG TGGCATGTTT GTATCAACGC CCGGCTGACA GCAAAGATGA TTTCGATAAC
GTCAGCAGCA AGATAGGGTT TAATTATTTG ATGAACGAGA GCGTCGCGCT TTTTGCTGAT
TGGTCTCAGG GATTCAGAGC ACCGCAGACG ACCGACTTGT ACCGAATTCA AAACCAGCAA
GTAGCAGGAC AAATTGAATC AGAAGAAATT CGGAGCCAAG AGGTTGGGGT AAGAGGCTTA
GCACTTGATA TGAACTTTGA GCTGGTGGCT TTTTATATGA CTAAAGATCA CTTCTTCTTC
AGAGATGATG ATGGCCTGAA TGTAACTGAT GCTGAAACGT CTCACAAAGG CGTGGAAGTG
GGGCTTGATT ATCCAATACT TAGTAACGTA TCTATTGCGG TTAATTACAC CTACGCGATT
CACCAATACG AATCAGAACA TGCCAATAGC GGTGTACTGA AAGGGAACGA CATTGATACG
GCTCCACGTC AGTTGGGCAA TGTGCGTCTC GCTTGGCAGC CCACTGAAGA CTCATCGTTG
GAGCTCGAAT GGGCGCACGT GGGTAGTTAC TACCTAGATC CATCGAATGA ACATGAATAC
CAAGGGCACA ATTTGTTGCA ACTTCGTGGT CAATTTTCGC TGACTGATAA AGTGCGTCTT
TTGGCGCGAC TAGAGAATGT ACTAGACGAG CGATATGCCA GTCGCGCAGA TTATGCGTTT
GGCTCTTATC GCTACTTTGG AGGCCAACCC AGAGCGATTC ATTTGGGCAT TGAAGCAAGA
TTTTAA
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| Protein sequence | MTKHADIHRK CRLSALIDES SHTKGGKNKN QVSNSIKHTL SNTLRTVMFR ESVKKRIPVF
QLSMLAVTSL VAASIAEAKA AEANTAKANM FKEDRSESQV TTTDISDVIV VTGTRQAENL
LTLTGNLARI NRQDIQTVSS VYPSDLLNRA SGVYVQANNG MESLPSLRSP VLTGPGAGGA
FLILEDGIAT RAAGFANNNG LSELNLAQAQ EVDIVRGPAS AIYGSNAVHG VVNVINQAVR
DGGDVSLLLG PNEHYQVQGT LGNDFGAHGL SINTQLIDNG GYQDDSDFTS AKVGLRHEYR
DDLNAITTSV AGFVLDQNTA GFIASGDNGE GCFESTYADD RLFKDTQAME KNCEDDAYRK
WSSMRVASKW QRTLSDDRYF VLTPYVRTND MEFRQHYLPS EAIEENSHSS FGLTSSYHWQ
FDPRLALVMG ADAEWTSGEL TETQQKASTF SFGKARQQGV HYDYEVDVLT LAPYVQADWQ
YSHALRMSAS VRFDSTHYDY KNRLADGTTQ ADGSPCVNGN NEPVACLYQR PADSKDDFDN
VSSKIGFNYL MNESVALFAD WSQGFRAPQT TDLYRIQNQQ VAGQIESEEI RSQEVGVRGL
ALDMNFELVA FYMTKDHFFF RDDDGLNVTD AETSHKGVEV GLDYPILSNV SIAVNYTYAI
HQYESEHANS GVLKGNDIDT APRQLGNVRL AWQPTEDSSL ELEWAHVGSY YLDPSNEHEY
QGHNLLQLRG QFSLTDKVRL LARLENVLDE RYASRADYAF GSYRYFGGQP RAIHLGIEAR
F
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