| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1822 |
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| Symbol | |
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| ID | 4172070 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2189984 |
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| End bp | 2192254 |
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| Gene Length | 2271 bp |
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| Protein Length | 756 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638054831 |
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| Product | TonB-dependent receptor, plug |
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| Protein accession | YP_661396 |
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| Protein GI | 109898141 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000398859 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTTAA CAACACACAA ACTGAATTCT CTAGCTCTGA GCATTTCGAT GGCACTGATG
TTGCCAAGCA CGGTATTGGC GCAACAAGAA GATGACCAAA GTAACAAAAA TGAGAATAAC
TATATTGAGC AAATCGTGGT CACGGGCAGT GCCAGCGGTA CTGCAGTGCG CAAAGTAGAA
GCAAGTTACG CTACAACCCT TATCAGCGCG GCTGACATTA AAAAACTTGC CCCTAAAAGC
ACAGCTGACC TGTTCAAAGC AATCCCTGGC GTTTGGGCCG AGAGCTCAGG TGGGGTGTCT
GGTGCTAATG TATTCGTTCG CGGATTTCCT GGCGGCGGCG ATGCACCGTT TTTAACCTTA
CAAGTTCAGG GCGTGCCTAT TTTTCCTCCT TCAACACTAT CTTTCCTTGA AAATTCGTCG
CTGTTTCGCA TTGATGAAAC CATTGACATC GTCGATGCAT TGCGCGGTGG ACCAGCCTCT
GTAGTATCCA GCGGCCAACC CGGTTTGACC ACTAACTTTT TGCTGAAAGA AGGGTCTGAT
GAAACTGAAG GCTCAATTAA ATATTCCACC TCAGACTATG ACTTACAACG TGTTGATGCG
GTTGTTTCTG GAAAATTAGC GGAAGATCTT TACTTCATGT TTGGTGGTTA TGTTCAGCAA
AGCCCAGGCA TTCGTGATGC TGGCTTTAAC TCTGAAAAAG GCAACCAGTT CACCCTTAAC
ATCACTAAAG TGTTGGATAA CGGTAAAATC AACTTTTTCA CCCGCACCAC TGACGATCAC
GGTGCATGGT ACTTACCTAC CCCATTAGTG GATGGCGTTG ATAACAGCTA CACCCAACTT
GGCACACTTA ATCGTCAAGC CACGATTCAA TATGGGCCAG AAGGCACATC TGAATCAGTC
GATTTTGGTG AAGGACGTGG TTTTAAAGGC ACGGTAACAG GGGGAAGTGT GAACCTAGAG
TTTGGTGAAG GATGGACATT TGTTGATCGC TTCGCGCATC TATCTGGCGA TGCCGATACC
TTCGGCTTAG TCCCTAATGG CAACCCAACA CTGTTATCGA GCGTGGCTGA TAATGGTGTA
TCAGCCACCG GCGCCGTAAC AGGTGACGTA TATGACGGCG ATACGTTAGT CCAGCAAATT
GGTCGCTGGG TAGTCCGTAA AGATATCGAA TCTTTTACCA ATGATGTGGC TGTCACGAAA
CAAACGGATA AATATAAAGC GTCTTTAGGA TTATATGTTG CCAACTTTTC ATCAGATGAT
TGGTGGAGCA TCGGCAATCA GTCATATCAT GTTATTCGCC CCAGTGGTGA GAATCTGACG
GGTATCGATT GTAACGATAA TCAAGACAGT TGCGACTGGA ACTACGATTT AAATGCCACC
GGGGATGGCA CAACCAAAGC GATTTACGCC GCTTTTGAAT ATAAGTTAAC GGATACCCTT
ACCGCTGATG TTGGGGTGCG TGATGAAAAC CACACCATTG ATTACACCGT AGATGAAGGC
CTAGACGGCA TGATTACCAA AGCGGTTCAA TATGATGAAT CTGACGTGGC ATTTACCGCT
GGGGTGAATT GGCAGTTCCA ACGTGAACGA GGTGTTTTTC TGCGTTATAG CGAAGGCAGC
AAAATGCCTT ACTTTGATGA CCTACGAGAA AATTTTAATA GCTTCTCATC AGGTGAAGAC
TTGATCACAG ACGTGACCCA AATAGAACTA GGTTATAAAT TAGCTGAAGC GAACTACACC
GTTTATGCCA CAGGCTTTTA CAACGAAGTA CAGGGTGACC GCTTTCAAGC AGTACCAGGT
GCTCCAGTCC AAACACTGAC TAACGAAGCT TATGGTGTTG AAATAGACGC AAATTACTTT
GCAGACAACG GTTTTTCTAT CTCGTTGAAT TCGACTATTC AAGAAACTGA AATTACTGAA
AGCCCTACTA ACAAAGGTAA TGAAGCACAG CGTCAACCAG GTTGGCAGGT ACGCTTGACG
CCAAGCTATG ACTTTGAGTT TGAAGACTTC TTTGCCACCT TATATGGCAC CATTTCTATG
GTCGATGATA GATTTGCCAA TAACGAAAAC ACGGTCGTTT TAGACGGTTA TGAAAAATAC
GACGTAGGGG TCATAGTGCA AGGTGACTCT GGATTAACCT TCGAGTTAGC GGTGCAAAAT
ATCACTGATG AAGATGCATT AACAGAAGGT GACCCACGTA ATCCTAGCGC GCCCAATGGT
CGTTACATTT TACCCAGAAC GGCAACCTTC AGCGTCAGTT ACGCATTTTA A
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| Protein sequence | MNLTTHKLNS LALSISMALM LPSTVLAQQE DDQSNKNENN YIEQIVVTGS ASGTAVRKVE
ASYATTLISA ADIKKLAPKS TADLFKAIPG VWAESSGGVS GANVFVRGFP GGGDAPFLTL
QVQGVPIFPP STLSFLENSS LFRIDETIDI VDALRGGPAS VVSSGQPGLT TNFLLKEGSD
ETEGSIKYST SDYDLQRVDA VVSGKLAEDL YFMFGGYVQQ SPGIRDAGFN SEKGNQFTLN
ITKVLDNGKI NFFTRTTDDH GAWYLPTPLV DGVDNSYTQL GTLNRQATIQ YGPEGTSESV
DFGEGRGFKG TVTGGSVNLE FGEGWTFVDR FAHLSGDADT FGLVPNGNPT LLSSVADNGV
SATGAVTGDV YDGDTLVQQI GRWVVRKDIE SFTNDVAVTK QTDKYKASLG LYVANFSSDD
WWSIGNQSYH VIRPSGENLT GIDCNDNQDS CDWNYDLNAT GDGTTKAIYA AFEYKLTDTL
TADVGVRDEN HTIDYTVDEG LDGMITKAVQ YDESDVAFTA GVNWQFQRER GVFLRYSEGS
KMPYFDDLRE NFNSFSSGED LITDVTQIEL GYKLAEANYT VYATGFYNEV QGDRFQAVPG
APVQTLTNEA YGVEIDANYF ADNGFSISLN STIQETEITE SPTNKGNEAQ RQPGWQVRLT
PSYDFEFEDF FATLYGTISM VDDRFANNEN TVVLDGYEKY DVGVIVQGDS GLTFELAVQN
ITDEDALTEG DPRNPSAPNG RYILPRTATF SVSYAF
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