| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1757 |
|---|
| Symbol | |
|---|
| ID | 4173686 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 2104360 |
|---|
| End bp | 2108322 |
|---|
| Gene Length | 3963 bp |
|---|
| Protein Length | 1320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638054767 |
|---|
| Product | exodeoxyribonuclease V, beta subunit |
|---|
| Protein accession | YP_661332 |
|---|
| Protein GI | 109898077 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
|---|
| TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCCCGT TAAACACCAA AACCTTTCCG CTCACTGGGG CATCATTGAT TGAGGCCAGT
GCAGGTACCG GTAAAACCTA TACCATAGTA AACTTGTATT TGCGCTTGTT GCTAGGGGAC
GAGTGCACAC CCTTAAGCGT CGATAAAATT CTAGTCGTGA CCTTTACTAA CGCCGCGACG
GCGGAACTAA AACAGCGCAT TCGCCAGCGA TTACAACGTG CTTATTTAGA TTTTTATGCT
GGGGTCAGCA GTGATGACTT CACTCAATAT CTCATTGAGC GAAGTGACAA TATTGAGCTC
GACTGTCATC GACTGTTATT GGCCATTAAG CAGATGGATG ATGCGGCTGT ATATACCATA
CATGGCTTCT GTCAGCGTAT GCTGAGTTTG CATGCGTTTG AAAGCGGCGC AATGTATGAG
CAGAGTCTCG TATTGGATGA GTCACAGTGG TTAAAACTGG CGGTTGAAGA TTACTGGCGC
GGGCATATTG TGCATCTACC GAGTCAGGTA CTGAACGAGT TGCTGGATAT ATGGCACTGC
CCCCAGGCGT TGCAATCGGC CTTGCGTTCG TTGCTGTATC GCCACGTGAC TCCTTTGCAA
ACAGTGGATG TTAAGACGAG TCACGAAAGC GTTGATAAAT ACATTAAAGC GCTGCAAGAT
ACCAAACGCT GGTGGCGAGA GAACGAGGTT GCTCAGCAAA TTATCGATGC TGACCTCAAA
GCGAATACCA AGCTAGGCAA AGCGGATTTT ATTGCCAAAA TGCAGGCTTT TTGCTTAAGC
GATGACAGTC GTGCTGATTT TGATAAAGAC TTATGGACCA CCTTTAGCCC AGCAAAAGTA
CTCAGCGCGA TGAAGAAAAC GTCTAAGAGC TTAGCGCACT TAGACTTCTC CCGTTTTGAA
ACACTTGCTC ATTTACAAAA GCAGTGCCAC GACCAGCTCT TGTTAGCGCA CAGTTTAGAT
GCACTTAAGC ATATCAGTAC TAACCTAGCC TCCAATAAGC AACGCCTACA GTTGCTCTCG
CCAGATGACT TACTGAGTAG CTTGCACCGC GCTTTGCTAG CCCAAGTCGA GTCGAACAGT
GGGCAGGTTA TCGAGCCAGA CAGCGAGCTA AGTCACCGTG ATAAGCTCGA CACCGCTCAC
CAGTCACTGG CTCAAGCGAT ACAACTTAGT TACCCAGCGG CATTGATTGA TGAGTTTCAA
GATACTGACC CAGTGCAGTT TGATATTTTC CGCATTATTT ACACACAGCA GTTTGGCGAT
GTTACGCCGT GTTGGGTGGC GATTGGCGAT CCTAAACAAG CGATTTACGC CTTTCGCGGG
GCTGATATTC ATACCTACAT TGCAGCGAAA AAGTTGGTGG ATGCCTCGCG ACAATTTACG
CTGGGCACCA ATTGGCGTTC ACAGCCGAGC TTAGTGGAGG GGGTTAATAC ACTCTTCACC
CAAAGCGAAG CGGGTTTCTT ATTTAAAGAC AGCATTCCGT TTCAAGCGGT GGCAAGCGTT
GAGCAACAAA GCGGTTTACA GGTTGTTGGT CAAGCTCATA ACAGCTTAGC CTTTCATCAC
TTGACCAGTA ATGATGGACT CCCGATTGGT TGGGGGGAGG CACAAAGTGC TCTTGCTCAA
CAGTGTGCGT TGAGTATTGC TCAGTTTATT CACCAAGGCG CCTCAGGTGA AGCCCAAATT
AAGCAGCGAC CAGTGAGACC AGGGGATTGC TGCGTTTTAG TACGAGACAG AAACGAAGCG
GACACCATCA AACAGGCCCT TGCTGCGCTA GGTGTTGATA GTATGTTTTT AGCGCGTAAA
AGTGTGTTTG CGAGTCAAAC CGCAGTGGAT TTATTTGCGA TTATTCAAGC GTTGGCAAAT
CCCAGTAATG ACCGTTATTT ACGGGGCGCA ATCGCCAGTG AGTTATTTTG CTACGACGCC
ACCACCTTAG ATGCGCTATT CAGCGATGAA TGGCAGTGGC AAAAGTTGGT AGAGCAATTC
GCTTATTGGC ATCAGTTATG GCAGCGACAA GGTTTAATGA TGGCGCTGAA TATTTTAATG
CGCCATTTTA AAATCGCTGA GCGCCTTGTC GGCCAATATC ATGATGGCCA GCGCCGCTTG
ACCGATCTGC GTCACTTAGT GGAGCTACTA CAAGTACAAA GCCAGTTGAT GTCAGGTGAA
AGTCAGATTT TACATTGGTT TCAAGCGCAT TTGGCCGAGC CAGATAATGA CAACGAAGGC
CAACAAATTC GCTTGGAAAC TGAACAGAAT TTGGTGCAAA TCATCACCCA ACATACCAGC
AAAGGATTGG AATATCCCTT GGTATTTATA CCTTTTGCCA GCCGCTGCCG AGAGATGAAA
GAAGCGATTT ATCACAATGA AAAAGACGGT TTAGTGATCG ACTTTTTAGG CGCAGACGAG
AACCTTGCTT TGGCCGATCA CGAACGTCTC GCTGAAGACA TACGTTTGTT GTATGTCGCG
CTGACCCGCG CGGTACATTA TTGCTTTATC GGCTTGTGGA ATAACAGTCA TCCACAGCGT
AAGAAAGAGT CACAGTTGAT GCAAACTGCG CTGGGCCGAG TACTGTTTAA TCAAGGCACA
CAGGTGAGTG ATGCTGTGAT TACTCAGCGA TTAGACGATT TAAGCCAGAC GATTGATGTG
GACTATCTCG GATTTACCGC ACAAGACGCC GAGCGAAAAG CGACCGAGTT TAAACAGTTC
TTACTGTCGC AAGATAGCAA AGAAAGTCTG CAAACTAACA GTAACGCCAT GCTGCGCGCT
GCGGTATTGC CTAAGCCTGT TACTCGGCGC TGGCGTTTAA CCAGTTATTC AGCCATCAGT
AGCCAGCAGC ATCATGAATT CGTTGCCCCA GGTCAAGATG AGGGCGCAGA TAAGTTGGAT
GTAATCAGTG CCTACGCTAG CGCCAATACA CAGTCTAAAA CTGAACCGGA GGCTGGTGAA
TATATTGCGC CGCAAATGGC GGCTGAAGCA ACACAAGACA ACCCAAGCGT TGAAGTTCAT
AACGACAGCG AGCAGATGCT GTTAGACGAT GAGACTGCCT TGCCACAAGC AAATGAGCCT
AATCGTGTTC TCGATGATAT ACATGGTATT AGCGATATTG ATGAAGTAGG CGCAGAGCAA
GAGGTGCTGG ATCAGTTTAC GTTTGTGAAG GGCGCCCAAG CGGGTTCATT TTTGCACGGC
GTGCTTGAGT CTATCGATTT CACCAACCCG ATTAATTTAA TGGACGTGAT CATCGAGAAA
GGCACTTGGT ATGGCATTGA ACAAAAGTGG TTTGCTGTGG TTGATAAGTG GCTGCGCGAT
GTGCTGCAGT CCAAGTTGAC CGCAGAGTCC TCAAATATTC AGCAAAACGG AGAACATCTG
AGTTTATCAG CGCTTGCTAA AAACCAAGTG CTGGTTGAAA TGGAATTTTA CCTGCCGCTT
TTAGAGGTAA AAGCGCAGAC GTTTAATCAC ATCCTTAATC AGCATATTCC ACAGCGTCAA
CATCATTATC AATTTGAGCA ACTCAACGGC ATGTTAAAAG GCTTTATTGA TTTAACGCTG
CAGTACCAAG GCAAATTTTA CGTGCTGGAT TACAAATCGA ACTATTTGGG GGCAGAATTT
GCTGATTATC ACGGTGAAGC CATGGCCAAT GCCATGGAAG AGCATGATTA CTATTTGCAA
GCCATTCTCT ATACCTTGGC GCTGCATCGT TGGCTTAAAA GTAAAAAATC GGATTATGCC
TACGCTGATG ACATAGGCGG TGCCTATTAC ACCTTCTTGC GTGGAATGCA CAGTGAAAAG
TCTGGAAATG GAGTATTTTA TTTGATGCCA GCGCAAGCCT TGATAGAAGA TTTAGATGCA
CTGTTTAATG GCGAATATCA GGTTAACAGT GAGCCTCAAC TTGCATCGTC AACGGCAGCT
AAAAACAGCA AGGATAGCGG CGATGATGCG CCCGCTGCGC AAGGACAGTT AGACTTATGG
TAA
|
|---|
| Protein sequence | MIPLNTKTFP LTGASLIEAS AGTGKTYTIV NLYLRLLLGD ECTPLSVDKI LVVTFTNAAT
AELKQRIRQR LQRAYLDFYA GVSSDDFTQY LIERSDNIEL DCHRLLLAIK QMDDAAVYTI
HGFCQRMLSL HAFESGAMYE QSLVLDESQW LKLAVEDYWR GHIVHLPSQV LNELLDIWHC
PQALQSALRS LLYRHVTPLQ TVDVKTSHES VDKYIKALQD TKRWWRENEV AQQIIDADLK
ANTKLGKADF IAKMQAFCLS DDSRADFDKD LWTTFSPAKV LSAMKKTSKS LAHLDFSRFE
TLAHLQKQCH DQLLLAHSLD ALKHISTNLA SNKQRLQLLS PDDLLSSLHR ALLAQVESNS
GQVIEPDSEL SHRDKLDTAH QSLAQAIQLS YPAALIDEFQ DTDPVQFDIF RIIYTQQFGD
VTPCWVAIGD PKQAIYAFRG ADIHTYIAAK KLVDASRQFT LGTNWRSQPS LVEGVNTLFT
QSEAGFLFKD SIPFQAVASV EQQSGLQVVG QAHNSLAFHH LTSNDGLPIG WGEAQSALAQ
QCALSIAQFI HQGASGEAQI KQRPVRPGDC CVLVRDRNEA DTIKQALAAL GVDSMFLARK
SVFASQTAVD LFAIIQALAN PSNDRYLRGA IASELFCYDA TTLDALFSDE WQWQKLVEQF
AYWHQLWQRQ GLMMALNILM RHFKIAERLV GQYHDGQRRL TDLRHLVELL QVQSQLMSGE
SQILHWFQAH LAEPDNDNEG QQIRLETEQN LVQIITQHTS KGLEYPLVFI PFASRCREMK
EAIYHNEKDG LVIDFLGADE NLALADHERL AEDIRLLYVA LTRAVHYCFI GLWNNSHPQR
KKESQLMQTA LGRVLFNQGT QVSDAVITQR LDDLSQTIDV DYLGFTAQDA ERKATEFKQF
LLSQDSKESL QTNSNAMLRA AVLPKPVTRR WRLTSYSAIS SQQHHEFVAP GQDEGADKLD
VISAYASANT QSKTEPEAGE YIAPQMAAEA TQDNPSVEVH NDSEQMLLDD ETALPQANEP
NRVLDDIHGI SDIDEVGAEQ EVLDQFTFVK GAQAGSFLHG VLESIDFTNP INLMDVIIEK
GTWYGIEQKW FAVVDKWLRD VLQSKLTAES SNIQQNGEHL SLSALAKNQV LVEMEFYLPL
LEVKAQTFNH ILNQHIPQRQ HHYQFEQLNG MLKGFIDLTL QYQGKFYVLD YKSNYLGAEF
ADYHGEAMAN AMEEHDYYLQ AILYTLALHR WLKSKKSDYA YADDIGGAYY TFLRGMHSEK
SGNGVFYLMP AQALIEDLDA LFNGEYQVNS EPQLASSTAA KNSKDSGDDA PAAQGQLDLW
|
|---|
| |