| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1748 |
|---|
| Symbol | |
|---|
| ID | 4173677 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 2090904 |
|---|
| End bp | 2092739 |
|---|
| Gene Length | 1836 bp |
|---|
| Protein Length | 611 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638054758 |
|---|
| Product | acetyl-CoA hydrolase/transferase |
|---|
| Protein accession | YP_661323 |
|---|
| Protein GI | 109898068 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0427] Acetyl-CoA hydrolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACCG CCTTACCTAA TAGGCCTGAC TGGCAAGCGT TACTTAAGTC TGGCAATCGT
ATTTTTATTG GCTCGAATGC TGCCGTTCCT AACGCACTCA TTGATGATTT AATCGCCAAT
AGCGGAGATT TAAAAGACAT AGAGCTGGTG CAATTTAATG CATTGTCAGA CAGTCGTTGG
GTTGACCCGC ATTTCAGTGA TTTATTCAAA GTAAACGCCT TGTTTATTGG CGGCGAAAAA
GTCCGTCAAG CGGTGGCTGA GGGGCGGGTC GATTACACGC CGTGTTTTTT ATCTGAAGTC
CCTTCACTGT TTGAGCAGGA TATCTTGCCT TTAGATGCCG CCTTTATCAT GGTCAGCCCG
CCTGACAAAT ACGGTTATTG TTCGTTAGGT GTGGCCGTTG ATGTGAATCT GGCGGCAGTT
AAAAAAGCCA AGTACGTGAT TGCTCAAATC AATACATCGA TGCCACGTAC CAGCGGCCAT
ACGTTTATTC GAATTGACGA CATAGCGGCA TGCATCGAAG TGGAGCAAGC GCTCCCAGAG
CTGCCTATTT ACGAACCAGA TAAAATCACA GAGCGTATCG GCCAATACGT TGCCATGTTG
GTTGACGATG GCGCCACGCT GCAACTAGGA GTGGGGAAAA TACCCAATGC GGTGCTGTAT
TACTTGCAGA ACCACAAAGA CTTAGGCGTG CACAGTGAAT TAATTACAGA CGGTATTATC
GATTTGATTG CTAAGGGCGT GATCAACAAC CGTAAAAAAA CCTTTCACCC CGGTAAAACA
GTGGCGAGTT TTTGTTTAGG CAGCAAAAAG CTATATGACT TTGTTGATAA CAATCCCCAC
GTGGAGTTCT ACCCCAGTGA TTATCTGAAC TCGCCGGCGA ATATTGCGCG TAATCATAAA
ATGGTGGCGA TAAATAGCGC ACTGGAAGTG GACTTAACGG GCCAAGTGGT TGCCGATTCC
ATTGGTTATC AGTTTTATAG TGGCATTGGC GGGCAGGTGG ATTTTATTCG TGGTGCTGCT
ATGTCGCCTG GAGGTAAACC GATTATTGCC ATGCCCTCTA CTGCAAAGGG AGGCACCATT
TCGCGTATAG TGCCTTTTAT CACAGAGGGA AGTGGGGTGG TGACGAGCCG CGGCCATGTG
CATTATGTAG TCACCGAATT TGGTGTCGCA TCTCTTAAGG GGCGAAGTAT TCGAGAGCGA
GCGCTGGAGC TAATTCGTGT AGCGCACCCT AAATTTCGTG AACAACTGTT GGCCAAAGTG
CGTGAGCATT ATTGGGTGCC GAACTATCAA AAGAATTATC CTCGAGATGT GCCTGAACTC
GGTCCATTAG GGTTTAAGAC GATGAAGATT GATAATCAAT CGTTTGACCT ACGGCCACTC
AACCCAGCAG ACGAACGTCG TCTGCAAGAG TTCTTCTATT CCCATACCAA AGAAACCCTG
TTTTACCGTT ATAACCATTA CCCCACACAA ATGACCCGTG AAAAGTCGTG TAATTTGGTC
AGTGTTGATC AGAGTCACGA CTTAGCCTTG TGCATTGTTA GGCAGCAAGG TTCGGCGTCA
GAAATTCAGG CCGTGGGGCG TTACTACTTG TGTGCCGACA ATAAAAGCTG TGAAGCGGCA
TTTGTCACCC GAGAATCGTT TCACGGAAAG GGCATGGCTA AACAACTATT GGCAGAAATG
ATCGTTATTG CAAAGCAAAG GGGGTTAACA AGAATGTTAG CGGTGGTCAG GGCGGATAAC
CGCAATATGA TTAGAGTTTT TGAAAGTGCG CATTTCGAGC GCCAACCTTC ACAAGAGATG
GGCGAAGTTA ATCTAACCTT GAATTTGGAC AAGTAA
|
|---|
| Protein sequence | MKTALPNRPD WQALLKSGNR IFIGSNAAVP NALIDDLIAN SGDLKDIELV QFNALSDSRW
VDPHFSDLFK VNALFIGGEK VRQAVAEGRV DYTPCFLSEV PSLFEQDILP LDAAFIMVSP
PDKYGYCSLG VAVDVNLAAV KKAKYVIAQI NTSMPRTSGH TFIRIDDIAA CIEVEQALPE
LPIYEPDKIT ERIGQYVAML VDDGATLQLG VGKIPNAVLY YLQNHKDLGV HSELITDGII
DLIAKGVINN RKKTFHPGKT VASFCLGSKK LYDFVDNNPH VEFYPSDYLN SPANIARNHK
MVAINSALEV DLTGQVVADS IGYQFYSGIG GQVDFIRGAA MSPGGKPIIA MPSTAKGGTI
SRIVPFITEG SGVVTSRGHV HYVVTEFGVA SLKGRSIRER ALELIRVAHP KFREQLLAKV
REHYWVPNYQ KNYPRDVPEL GPLGFKTMKI DNQSFDLRPL NPADERRLQE FFYSHTKETL
FYRYNHYPTQ MTREKSCNLV SVDQSHDLAL CIVRQQGSAS EIQAVGRYYL CADNKSCEAA
FVTRESFHGK GMAKQLLAEM IVIAKQRGLT RMLAVVRADN RNMIRVFESA HFERQPSQEM
GEVNLTLNLD K
|
|---|
| |