Gene Patl_1706 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1706 
Symbol 
ID4171915 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp2040339 
End bp2040830 
Gene Length492 bp 
Protein Length163 aa 
Translation table11 
GC content45% 
IMG OID638054716 
Productprotein tyrosine phosphatase 
Protein accessionYP_661281 
Protein GI109898026 
COG category[T] Signal transduction mechanisms 
COG ID[COG0394] Protein-tyrosine-phosphatase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTTTGACA AAAAAGTAAA AAAAACTATC ACATCAGTCC TTTTCGTATG TTTGGGCAAT 
ATTTGTCGCT CGCCTACGGC GGAAGCGATA TTTCGCCATA AAGCACTACA TGCGGGCATG
AGTATTGAAA TAGATTCCGC CGGTACGCTT GGGGCACATA TAGGTTCGCC ACCGGACAAG
CGTTCACGGG CTGTGGGCGA AGAGAGGGGC TATAGTTTTA AGAAAATAAA ATGCCGTAAG
GTAGACCCAA GTGATTTTGA ACACTTCGAT TACATTGTCG CCATGGACAA ACAGAATCTA
CGAAACTTAC TAGAAATATG CCCAGAGGAA CATCAACACA AGATTGCTCT TATGATGAGT
TTTTGTTCCT CACAAGAAGA TGAAGTGCCG GACCCCTACT ACGGGGGCAA GCGCGGGTTT
GAATACGTAT TGGATTTAAT TGAACAGGCA TCGGATGGCC TGCTTGAACA GATCAAGCAG
CGTTTTGCTT AA
 
Protein sequence
MFDKKVKKTI TSVLFVCLGN ICRSPTAEAI FRHKALHAGM SIEIDSAGTL GAHIGSPPDK 
RSRAVGEERG YSFKKIKCRK VDPSDFEHFD YIVAMDKQNL RNLLEICPEE HQHKIALMMS
FCSSQEDEVP DPYYGGKRGF EYVLDLIEQA SDGLLEQIKQ RFA