| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1697 |
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| Symbol | |
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| ID | 4171905 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2031731 |
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| End bp | 2032684 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638054707 |
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| Product | tRNA pseudouridine synthase B |
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| Protein accession | YP_661272 |
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| Protein GI | 109898017 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGCTAGAC GTCGTAAAGG TCGCGCAATA GACGGAATTT TGTTGTTAGA CAAACCATTG
GAAATTTCGT CAAATCAGGC GCTGCAAAAA GTGAAACGCG CATTTTTAGC CGCCAAGGCC
GGTCATACTG GCGCACTGGA TCCACTGGCT ACCGGGATGT TGCCAGTGTG TTTAGGTGAA
GCCACTAAGT TTTCCCAGTT TTTATTAGAT GCCGATAAAA CCTATATTGT TACGGCTAAG
TTAGGCGTAA GAACAACGAC GTCAGACGCT GATGGTGAGG TTGTTGATAC CCGTCAAGTG
AATGTGACTG AGCAGCAATT AATTGATGCA TGCGAGACGT TTAAAGGGCC AATCAAACAA
GTTCCGTCAA TGTTCTCAGC GTTAAAGCAT CAGGGCAAAC CTCTGTACCA CTATGCACGT
CAAGGAATAG TCATCGAGCG AGAAGCGCGC GATATCACTA TTTTCTCACT TAAGATCACT
CGCTTTGAAG GTGATGAAGT CGACATGGAA GTGCACTGCA GTAAAGGCAC TTACATACGC
TCCTTGGTTG ATGATCTAGG ACAGCTTTTA GGCTGCTGTG CCTATGTGAG TAAATTGCAT
CGTACTGCTG TCGCTGATTA CCCGAGCGAC AAAATGGTGA CCTTTGAAAT GCTTGAGTCT
TTGCTCGAAA AAGCCCAAGC GGAGCAAATA CCCCTAACGG ATATTCTCGA CCCATTGTTA
ATCCCCATGG ACAGCGCCGT AAAAGCACTG CCTAGTGTTG AACTCACACC CGCTTCAAGA
GACTCATTTC TGCATGGTCA GCCAGTGCCT TATGTTAGTG AGGCCACTAT TGACCAGGGC
ACTCTGGTGC GCACATATTG CACTGAAGGA AACGTATTCT TGGGTGTGTC AGAGCTCGAT
AGCGATAACA AAGCGGCCCC TAAACGTGTT GTGGTGTTCA CCGAGCAAGG TTAG
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| Protein sequence | MARRRKGRAI DGILLLDKPL EISSNQALQK VKRAFLAAKA GHTGALDPLA TGMLPVCLGE
ATKFSQFLLD ADKTYIVTAK LGVRTTTSDA DGEVVDTRQV NVTEQQLIDA CETFKGPIKQ
VPSMFSALKH QGKPLYHYAR QGIVIEREAR DITIFSLKIT RFEGDEVDME VHCSKGTYIR
SLVDDLGQLL GCCAYVSKLH RTAVADYPSD KMVTFEMLES LLEKAQAEQI PLTDILDPLL
IPMDSAVKAL PSVELTPASR DSFLHGQPVP YVSEATIDQG TLVRTYCTEG NVFLGVSELD
SDNKAAPKRV VVFTEQG
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