Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1653 |
Symbol | |
ID | 4174082 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 1970010 |
End bp | 1971545 |
Gene Length | 1536 bp |
Protein Length | 511 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638054663 |
Product | sodium/proline symporter |
Protein accession | YP_661229 |
Protein GI | 109897974 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only |
COG ID | [COG0591] Na+/proline symporter |
TIGRFAM ID | [TIGR00813] transporter, SSS family [TIGR02121] sodium/proline symporter |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAACAG CCACTTTTAT ATCATTAGGA TTGTACTTTC TCGCCATGCT CGCTATTGGC CTTTATTCTT TCAAACAGGC AAATACTGAC GTAGAAGGTT ATATGCTGGG GGGGCGAAAC CTTAGCCCAA AGGTTACTGC CCTTTCGGCT GGCGCTTCAG ATATGAGCGG ATGGATGTTA ATGGGCTTAC CCGGCGCAAT GTATTTGACC GGTTTGTCTA GTGCTTGGAT AGCCATAGGA CTCGTCATTG GCGCCTATTT TAACTATGTA CTGGTAGCTC CCCGTTTACG GGTATACACA GAAGTGGCAA ATAATGCGAT TACTATCCCT GACTACTTTG AGAATCGGTT CAACGACAAA AGCCGCGTTT TGCGCATTGT TTCCTCTATC GTCATTGTGC TGTTTTTTAC CTTATATACC TCATCCGGTG TCGTTGCTGG CGGCAAATTG TTTGAAACAT CATTCGGTCT AAATTATGAG TTGGGTTTAT ACATTACCGC TGGTGTGGTT GTGGCTTATA CCTTATTTGG AGGGTTTATG GCTGTGAGCA TCACTGACTT TGTGCAAGGA TGTATCATGT TTGTAGCGCT GGTATTGGTT CCAGTGGTGG TGCTCGTCGA TTTAGACGGT TGGCAAGGTG TCACCCAGTC TTTAAGTACC CTTAATGGTC AATACTTAGA TATGTTCGTC AATGCTTCAA ATGGTGAGCT TGTATCGACA ATTGCCATCA TATCCATGCT GTCTTGGGGA TTCGGGTATT TTGGGCAACC CCATATCATT GTGCGCTTCA TGGCCATTCG CAGCGTAAAC GACATTAAAA CCGCTCAGAC GATCGGCATA TCGTGGATGG TAGTAGCCAT AACAGGGGCA TTAGCAACGG GGCTACTAGG GCTAGCCTAT GTGACCAAAC AGGGCACACC ATTGAATGAC GCGGAAACAA TATTTATTTA TTTATCTCAG TTGCTCTTTC ATCCTTTAAT CGGTGGTTTC TTGCTTGCAG CAATTCTGGC TGCAATTATG AGCACTATTT CCTCGCAATT ACTGGTCACA TCGAGCTCTC TAACGAGCGA CTTTTATCAA GCATTTTTCA GACGAGATGC GAGTCAACAC GAACTGATCA TTGTTGGCCG TATATCCGTG GTCATTGTTG CTTTGGTCGC TATTTTCTTG GCGTACGACA GAGATAGCAG CATATTGTCA TTGGTCAGTA ATGCGTGGGC CGGTTTCGGT GCAGCATTTG GGCCTTTGAT TTTATTCAGT CTATTTTGGA AGCGAATGAC ACTCATCTCA GCCATAAGTG GCATGTTAGT CGGCGCTGTA ACAGTGTTAT TATGGATTTA TTTGCCAATT ACTATCAATG GCCAGAGCCT AAGTGCTTGG CTATACGAAA TAGTACCGGG CTTTATATTG TCGAGCTTGA CTATTGTTGT AATCAGCCTA GTGTCAAAAC AAAGTGATAG TTCAATTATC AATACATTTG AGAAAGTAGA GAAGACTCTG CACGACTCGG TGAATAACGG CGGCAATGCT TCTTAA
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Protein sequence | METATFISLG LYFLAMLAIG LYSFKQANTD VEGYMLGGRN LSPKVTALSA GASDMSGWML MGLPGAMYLT GLSSAWIAIG LVIGAYFNYV LVAPRLRVYT EVANNAITIP DYFENRFNDK SRVLRIVSSI VIVLFFTLYT SSGVVAGGKL FETSFGLNYE LGLYITAGVV VAYTLFGGFM AVSITDFVQG CIMFVALVLV PVVVLVDLDG WQGVTQSLST LNGQYLDMFV NASNGELVST IAIISMLSWG FGYFGQPHII VRFMAIRSVN DIKTAQTIGI SWMVVAITGA LATGLLGLAY VTKQGTPLND AETIFIYLSQ LLFHPLIGGF LLAAILAAIM STISSQLLVT SSSLTSDFYQ AFFRRDASQH ELIIVGRISV VIVALVAIFL AYDRDSSILS LVSNAWAGFG AAFGPLILFS LFWKRMTLIS AISGMLVGAV TVLLWIYLPI TINGQSLSAW LYEIVPGFIL SSLTIVVISL VSKQSDSSII NTFEKVEKTL HDSVNNGGNA S
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