Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1628 |
Symbol | |
ID | 4174057 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 1935321 |
End bp | 1936850 |
Gene Length | 1530 bp |
Protein Length | 509 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638054638 |
Product | tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit |
Protein accession | YP_661204 |
Protein GI | 109897949 |
COG category | [C] Energy production and conversion |
COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain [COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region [TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00231354 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTGTTA TCCGTCAACA GGACTTTATC GATAGCATTG AAGATTCTTT GCAGTTTATT TCCTATTATC ATCCGTTAGA TTATATCAAG GCCGTTGAAA AAGCCTACAA CAAGGAAGAA AGTCAGGCCG CAAAAGACGC TATGGCACAA ATACTGATTA ATTCACGTAT GTCAGCCGAA GGTAAGCGTC CGTTATGTCA AGATACGGGC ATAGTGACCT GTTTCGTTAA AATAGGTATG GGTGTGCAGT GGGATAAAAC TGACCTGACG GTGCAGCAAA TGGTTGATGA GGGAACGCGT CGCGCTTATA ACAATAAAGA AAATCCGTTG CGTGCTTCTA TTGTTTCAGA TCCAGCGGGT GCGCGTAAAA ATACCAAAGA CAATACGCCA GCGGTTGTGC ATATCGATAC CGTACCAGGC GAAGGTATTG AAGTGATGAT CGCGGCCAAA GGTGGCGGTT CAGAAAATAA ATCTAAAATG GTGATGTTAA ACCCCAATGA CAGCATTGCA GATTGGGTGG TGAAAACCTT ACCGACTATG GGGGCAGGGT GGTGTCCACC GGGCATGCTG GGTATAGGCA TAGGTGGTAC CGCTGAAAAA TCAGCCGTTC TTGCCAAAGA AAGCTTGATG GATCCGGTTG ATATCCAGGA GCTAATGGAC AGAGGCGCAC AAACGACCGA AGAAAAATTG CGTCTTGAAA TCTTCAAAAA AGTGAATGAT TTAGGGATAG GTGCACAAGG TTTGGGCGGT TTAACCACCG TGGTTGATAT TAAAATTAAA TCATTGCCAA CCCATGCCGC TTCATTGCCA GTGACGATGA TCCCTAACTG TGCAGCAACC CGCCATGCGC ATTTCCATCT TGATGGTACT GGTGCAGCAG AATTTACACC GCCTGATTTA AACGATTGGC CTGAAGTGAC GTGGGAAGTG AGTAAAGACA CCCGCCGCGT TAATTTAGAT GACGTCAAAA AAGAAGATAT TCAAGAATGG AAAGTAGGCG AAACGGTATT GCTTTCTGGC AAGATGTTAA CCGGACGCGA TGCCGCTCAC AAACGTATTC AAACCATGCT CGATAATGGA GAAGGCTTGC CAGATGGTGT GGATTTGACC GACCGCTTCA TTTATTACGT GGGCCCAGTT GATGCAGTAG GTGACGAAGT TGTGGGACCT GCAGGCCCAA CAACGGCTAC CCGTATGGAC AAATTCACTG ATTTGATGCT TGAACAAACT GGCCTTATTG GCATGATTGG TAAAGCCGAA CGTGGCCCAG CTACGGTTAG CAGTATTGCC AAGCACAAAG CGGTCTATTT GATGGCCGTG GGCGGTGCCG CTTACTTGGT GTCTAAAGCG ATTAAGAAGT CACGTGTGGT GGCATTCGAG GATTTAGGGA TGGAAGCCAT CTATGAATTC GAAGTGAAAG ACATGCCGGT TACTGTTGCA GTAGACAGCA CTGGGGCCAA TGCCCATGAA ACTGGACCTG CCATTTGGAA GGTGAAGATT CAAGAAGCAA ACGCCAAAGC CGAAGCTTGA
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Protein sequence | MAVIRQQDFI DSIEDSLQFI SYYHPLDYIK AVEKAYNKEE SQAAKDAMAQ ILINSRMSAE GKRPLCQDTG IVTCFVKIGM GVQWDKTDLT VQQMVDEGTR RAYNNKENPL RASIVSDPAG ARKNTKDNTP AVVHIDTVPG EGIEVMIAAK GGGSENKSKM VMLNPNDSIA DWVVKTLPTM GAGWCPPGML GIGIGGTAEK SAVLAKESLM DPVDIQELMD RGAQTTEEKL RLEIFKKVND LGIGAQGLGG LTTVVDIKIK SLPTHAASLP VTMIPNCAAT RHAHFHLDGT GAAEFTPPDL NDWPEVTWEV SKDTRRVNLD DVKKEDIQEW KVGETVLLSG KMLTGRDAAH KRIQTMLDNG EGLPDGVDLT DRFIYYVGPV DAVGDEVVGP AGPTTATRMD KFTDLMLEQT GLIGMIGKAE RGPATVSSIA KHKAVYLMAV GGAAYLVSKA IKKSRVVAFE DLGMEAIYEF EVKDMPVTVA VDSTGANAHE TGPAIWKVKI QEANAKAEA
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