Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1626 |
Symbol | |
ID | 4174055 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 1933100 |
End bp | 1933693 |
Gene Length | 594 bp |
Protein Length | 197 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638054636 |
Product | NUDIX hydrolase |
Protein accession | YP_661202 |
Protein GI | 109897947 |
COG category | [L] Replication, recombination and repair [R] General function prediction only |
COG ID | [COG0494] NTP pyrophosphohydrolases including oxidative damage repair enzymes |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.706755 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATAAAA ATGAATTTCT CTCTCGTTTT CATCATGCCC GTACTATCCA CCCTGAATTG GACTATCCAT TGCTTACTGC CGGTAAGCCT GCCGCAGTAT TAATGCCCAT GCTTGAAAGA CAGGGCCAAC TTAGCATGTT GTTCACATTA CGCTCTAGGC ACTTAAAGCA CCACGCTGGT CAAGTAAGCT TCCCCGGCGG CAAGCAAGAA CCAAGTGACA ACAACCTTTT AAGTACGGCT TTAAGAGAGA CCCATGAAGA AATCGGTATT CACCCGCAAT GTATAGAAGT GGTGGGCAGC CTGCCGCGTT ATCGTACCGT GAGCCGCTAT GAAGTCATCC CTTATGTGGG TTTTGTGCGC ATGCCATTAG AAATGACACT GGATACCAAC GAAGTGGAAT CAGTGTTTGA AGTCCCCCTG TCGTTCTTAC TTGACAAAAA TAATCACTTT ATCCATTGGG TGAAGCGTAA AAACGCCGCC CAGCATCCCA TTTATTTTAT AAAATGGCAC GAACAAGTCA TATGGGGAGC AACCGCTGCG TTCGTTCGTG TGTTATCAAA CCATGTAGCC CAAGACTTTT CAGTCGAGCA GTAA
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Protein sequence | MNKNEFLSRF HHARTIHPEL DYPLLTAGKP AAVLMPMLER QGQLSMLFTL RSRHLKHHAG QVSFPGGKQE PSDNNLLSTA LRETHEEIGI HPQCIEVVGS LPRYRTVSRY EVIPYVGFVR MPLEMTLDTN EVESVFEVPL SFLLDKNNHF IHWVKRKNAA QHPIYFIKWH EQVIWGATAA FVRVLSNHVA QDFSVEQ
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