Gene Patl_1626 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1626 
Symbol 
ID4174055 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp1933100 
End bp1933693 
Gene Length594 bp 
Protein Length197 aa 
Translation table11 
GC content46% 
IMG OID638054636 
ProductNUDIX hydrolase 
Protein accessionYP_661202 
Protein GI109897947 
COG category[L] Replication, recombination and repair
[R] General function prediction only 
COG ID[COG0494] NTP pyrophosphohydrolases including oxidative damage repair enzymes 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.706755 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATAAAA ATGAATTTCT CTCTCGTTTT CATCATGCCC GTACTATCCA CCCTGAATTG 
GACTATCCAT TGCTTACTGC CGGTAAGCCT GCCGCAGTAT TAATGCCCAT GCTTGAAAGA
CAGGGCCAAC TTAGCATGTT GTTCACATTA CGCTCTAGGC ACTTAAAGCA CCACGCTGGT
CAAGTAAGCT TCCCCGGCGG CAAGCAAGAA CCAAGTGACA ACAACCTTTT AAGTACGGCT
TTAAGAGAGA CCCATGAAGA AATCGGTATT CACCCGCAAT GTATAGAAGT GGTGGGCAGC
CTGCCGCGTT ATCGTACCGT GAGCCGCTAT GAAGTCATCC CTTATGTGGG TTTTGTGCGC
ATGCCATTAG AAATGACACT GGATACCAAC GAAGTGGAAT CAGTGTTTGA AGTCCCCCTG
TCGTTCTTAC TTGACAAAAA TAATCACTTT ATCCATTGGG TGAAGCGTAA AAACGCCGCC
CAGCATCCCA TTTATTTTAT AAAATGGCAC GAACAAGTCA TATGGGGAGC AACCGCTGCG
TTCGTTCGTG TGTTATCAAA CCATGTAGCC CAAGACTTTT CAGTCGAGCA GTAA
 
Protein sequence
MNKNEFLSRF HHARTIHPEL DYPLLTAGKP AAVLMPMLER QGQLSMLFTL RSRHLKHHAG 
QVSFPGGKQE PSDNNLLSTA LRETHEEIGI HPQCIEVVGS LPRYRTVSRY EVIPYVGFVR
MPLEMTLDTN EVESVFEVPL SFLLDKNNHF IHWVKRKNAA QHPIYFIKWH EQVIWGATAA
FVRVLSNHVA QDFSVEQ