| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1579 |
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| Symbol | trmD |
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| ID | 4173833 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1885503 |
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| End bp | 1886300 |
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| Gene Length | 798 bp |
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| Protein Length | 265 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638054589 |
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| Product | tRNA (guanine-N(1)-)-methyltransferase |
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| Protein accession | YP_661155 |
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| Protein GI | 109897900 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0336] tRNA-(guanine-N1)-methyltransferase |
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| TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGTTCAG ATACACAGCG TTGGTTTGGG GTAGTGAGTC TGTTTCCTGA AATGTTTCAG
ACTTTTACCG AACAGGGCGT AACAGGACGA GCTGTAAAAA GCGGTAAGTT GAAAGTAGAT
TTCTTTAATC CAAGAGATTT TACTCACGAC AAACATCGTA CTGTTGACGA CCGACCATAC
GGTGGTGGTC CAGGAATGCT GATGATGGTT CAGCCTTTAT TAGACGCAAT TCGTGCAGCC
AAACAGGCTG CCGAGAAAAA AACTAAGGTG ATTTATCTCT CACCTCAGGG GAAAACATTA
ACACAGCGTG GTGTGAAGCA GCTTTCTGAA AATGAAAGTG TGATTCTAGT CGCCGGTCGC
TACGAAGGTA TCGACGAGAG AGTAATAGAA GCTGAAATAG ACGAAGAATG GTCTGTTGGT
GACTATATTC TCAGCGGTGG TGAACTACCT GCGATGATCT TAATGGATGC GGTCGCAAGA
CTGGTACCTG GTGTATTAGG GCATGCACAA TCTGCCGAGC AAGATTCGTT TAGCGACGGT
TTGCTAGATT GTCCGCACTA TACCCGACCA GAAAACTTGA ATGGCCAATC AGTTCCTTCT
GTATTGTTGA GTGGGGATCA TCAAAAAATC AAACAGTGGC GTGATAAACA GTCGCTAGGT
AGAACCTGGC AACGACGCCC TGAATTATTA AACGACCTAG CTCTGACTGA GGAGCAACAA
CGTTTGTTAG ATGAATATCA GCAAGAGTTG TTGCAGCAAA ATGGCAGTTA TTCTGGGATG
AGAGGATATG ATGAGTAA
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| Protein sequence | MSSDTQRWFG VVSLFPEMFQ TFTEQGVTGR AVKSGKLKVD FFNPRDFTHD KHRTVDDRPY
GGGPGMLMMV QPLLDAIRAA KQAAEKKTKV IYLSPQGKTL TQRGVKQLSE NESVILVAGR
YEGIDERVIE AEIDEEWSVG DYILSGGELP AMILMDAVAR LVPGVLGHAQ SAEQDSFSDG
LLDCPHYTRP ENLNGQSVPS VLLSGDHQKI KQWRDKQSLG RTWQRRPELL NDLALTEEQQ
RLLDEYQQEL LQQNGSYSGM RGYDE
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