Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1578 |
Symbol | rimM |
ID | 4172571 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 1884973 |
End bp | 1885503 |
Gene Length | 531 bp |
Protein Length | 176 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638054588 |
Product | 16S rRNA-processing protein RimM |
Protein accession | YP_661154 |
Protein GI | 109897899 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.637772 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTCACG CGTCTGACAC ATTAGTGATG GGCAAAATCG GCGCACCTTA TGGTGTTAAA GGTTGGGTCA AAATCACTTC ATATACCGAT GAATTAGACG GTATTTTTAG CTATACCCCT TGGCTTGTGG GCCAAGAAGG GAATACTAAA GAAATCGTCG TTGACCAATG GCGAACCCAC AATAAAGGAT TGGTTGCCAA ACTGGTTGGG GTTGAAACAA GAGACGATGC TGAAAGTATC AAAAATCTCG ACATTTCAAT TAAAGCTCAA CAGCTACCTC AGTTAGATGG TGATGAATTT TATTGGAGAG AGTTGGTCGG CATGCAAGTC GTAACCGAAC AGGGCTACAA CTTAGGTGTC GTGAAAGAAT TATTCGAAAC GGGTGCGAAT GACGTTATGT TAATCAAAGC CAATTTGAAA GATGCTTTCG GTCAAAAAGA ACGCATGGTC CCTTACTTAA TTGACCAAGT CGTTAAGAAA GTGGACCGTG AGGCGAAGAC CATACAGGTT GATTGGGATC CGAGCTTTTA A
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Protein sequence | MSHASDTLVM GKIGAPYGVK GWVKITSYTD ELDGIFSYTP WLVGQEGNTK EIVVDQWRTH NKGLVAKLVG VETRDDAESI KNLDISIKAQ QLPQLDGDEF YWRELVGMQV VTEQGYNLGV VKELFETGAN DVMLIKANLK DAFGQKERMV PYLIDQVVKK VDREAKTIQV DWDPSF
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