| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1561 |
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| Symbol | |
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| ID | 4172553 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1866713 |
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| End bp | 1867183 |
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| Gene Length | 471 bp |
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| Protein Length | 156 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638054570 |
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| Product | rRNA large subunit methyltransferase |
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| Protein accession | YP_661137 |
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| Protein GI | 109897882 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1576] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00246] rRNA large subunit m3Psi methyltransferase RlmH |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCGAATTC AACTAATAGC CGTTGGCAGT AAAATGCCAA GTTGGGTTGA ACAAGGTTAC
CAACAATACG TTAAACGTTT TCCTTCTGAT ATGCCCCTTA GCCTAACAGA GATACCTGCT
GGTAAGCGCG GTAAAAATGC GGACATAAAA CGTATTTTGC ACAAGGAAGG CGAATTGACC
ATGGCAGCAA TTCCTAAAGG CAATCGCATT GTGACTCTTG AAGTGACGGG TAAGCCTTGG
GATACTCCAA TGCTTGCGAG TAATATGCAA AAGTGGCAAA TGGATGGGCG GGATGTCAGC
CTACTCATTG GCGGCCCTGA GGGCTTAGCA CCGGAGTGTA TTGCTGCATC TGAACAAAAA
TGGTCTCTAT CTCCGCTCAC TTTGCCCCAC CCTCTAGTCA GGATCATTGT CGCTGAAAGC
TTGTATCGAG CTTGGTCGGT GAATACCAAC CATCCGTATC ATCGAGAATA A
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| Protein sequence | MRIQLIAVGS KMPSWVEQGY QQYVKRFPSD MPLSLTEIPA GKRGKNADIK RILHKEGELT
MAAIPKGNRI VTLEVTGKPW DTPMLASNMQ KWQMDGRDVS LLIGGPEGLA PECIAASEQK
WSLSPLTLPH PLVRIIVAES LYRAWSVNTN HPYHRE
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