| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1554 |
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| Symbol | |
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| ID | 4172546 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1859167 |
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| End bp | 1859820 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638054563 |
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| Product | lipoate-protein ligase B |
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| Protein accession | YP_661130 |
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| Protein GI | 109897875 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0321] Lipoate-protein ligase B |
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| TIGRFAM ID | [TIGR00214] lipoate-protein ligase B |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00660992 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | TTGAACGACA CAACCCCTGT CATTATTCGC CAGCTCGGCC GCCAAGCGTA TTTTCCGATT
TGGCAAGCGA TGCAAGATTT TACCGATTCG CGGGACAGCA GCAGCCAAGA CGAAATATGG
CTAGTTGAAC ACGACCCTGT ATTTACACAA GGCCAAGCCG GTAAAGAAGA GCACCTTCTT
GCCCCAGGGG ATATCCCAGT CGTAAAAGTC GACCGAGGTG GTCAAGTCAC CTATCACGGC
CCTGGCCAAC AAATGATGTA TGTGCTGTTA AACTTAAAGC GACACGGCTT AGGTGTACGC
ACCTTGGTTA GCGCATTAGA GAGCTGCATT GTTGATACAT TAAAAGAGTA CAAGGTAGAC
GCTTACCCGA AGGCAGATGC CCCTGGTGTG TATGTTGATA ACAAAAAGGT CTGTTCAATT
GGCTTACGTA TTCGTCGAGG ATGTTCCTTT CATGGCCTTG CCCTGAACGT TAATATGGAC
TTAGCACCCT TTCAACGAAT TAATCCTTGT GGTTATGCCG GCCTAGAAAT GGTAGATTGC
ACCCAATTAG GCGGGCCAGA TTCACTCGCG GTTGCTGGCC CAGCTATCGC CGAAAAATTA
TGTTCATTGC TTGGTATTGC AAGCGTCGAA AACAAAGAAG GTTTTGATGA GTAA
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| Protein sequence | MNDTTPVIIR QLGRQAYFPI WQAMQDFTDS RDSSSQDEIW LVEHDPVFTQ GQAGKEEHLL
APGDIPVVKV DRGGQVTYHG PGQQMMYVLL NLKRHGLGVR TLVSALESCI VDTLKEYKVD
AYPKADAPGV YVDNKKVCSI GLRIRRGCSF HGLALNVNMD LAPFQRINPC GYAGLEMVDC
TQLGGPDSLA VAGPAIAEKL CSLLGIASVE NKEGFDE
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