Gene Patl_1553 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1553 
Symbol 
ID4172545 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp1858212 
End bp1859174 
Gene Length963 bp 
Protein Length320 aa 
Translation table11 
GC content46% 
IMG OID638054562 
Productlipoyl synthase 
Protein accessionYP_661129 
Protein GI109897874 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0320] Lipoate synthase 
TIGRFAM ID[TIGR00510] lipoate synthase 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.108222 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTAACG CACGTCCACA AGCCGGAGAA AAACTCCGGG ATGATGAAAA AGTTAAACAT 
ATTCCGATCA CTATCATGCC CACTGAAAAG GCAGAGATGT TGCGCAAACC AGAGTGGATT
AAAATTCGCT TACCGCGCAC CACGGATCGT ATCGATCATA TTAAAAAGAC ATTGCGTAAA
AACAATTTGC ACTCGGTGTG CGAAGAAGCA AGTTGCCCCA ACCTTGCTGA ATGTTTTAAC
CATGGTACTG CGACCTTTAT GATTTTGGGC GATATATGCA CCCGTCGCTG CCCGTTTTGT
GATGTTGCTC ATGGCAAGCC ACTGCCTCCA AGTGCAGAAG AGCCTGTCAA ATTAGCCAAG
ACCATCGCTG AAATGCAACT TAAGTATGTG GTTATCACCT CTGTGGATCG CGATGATTTA
CGTGACGGTG GCGCCCAACA CTTTGTTGAT TGCATAAACG CTATTCGCGA GCACAGTCCA
ACGACTAAAA TTGAAGTACT TGTACCCGAT TTTCGCGGTC GTATGGACAA AGCATTAGAG
ATCCTTAAAA ACGGCGTGCC AGATGTGTTT AATCATAATT TGGAAACCAT CCCTCGCCTT
TACCGTGAAT GTCGCCCTGG GGCAAACTAT CAGTGGTCAC TTGATTTGCT TAAGAAATTC
AAAGAACAAC ATCCTGATAT CCCCACCAAA TCAGGCTTAA TGATGGGCAT GGGCGAAAAC
AAAGAAGAAA TCGCAGAAGT ACTTAAAGAC TTACGCGCAC ACAATGTTGA GATGCTTACC
CTTGGTCAGT ACCTACAACC GAGTAAGCAC CACTTCCCAT TAAAGCGTTA TGTGCATCCT
ACGGAGTTTG ACGAGCTTGG CGTGATCGCG AAAGAGATCG GCTTTACTCA CGCAGCATGT
GGCCCTATGG TGCGTTCAAG CTACCATGCT GATAAGCAAG CAGCCGGTGT AGAAGTTAAG
TAA
 
Protein sequence
MSNARPQAGE KLRDDEKVKH IPITIMPTEK AEMLRKPEWI KIRLPRTTDR IDHIKKTLRK 
NNLHSVCEEA SCPNLAECFN HGTATFMILG DICTRRCPFC DVAHGKPLPP SAEEPVKLAK
TIAEMQLKYV VITSVDRDDL RDGGAQHFVD CINAIREHSP TTKIEVLVPD FRGRMDKALE
ILKNGVPDVF NHNLETIPRL YRECRPGANY QWSLDLLKKF KEQHPDIPTK SGLMMGMGEN
KEEIAEVLKD LRAHNVEMLT LGQYLQPSKH HFPLKRYVHP TEFDELGVIA KEIGFTHAAC
GPMVRSSYHA DKQAAGVEVK