| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1443 |
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| Symbol | |
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| ID | 4173600 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1733332 |
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| End bp | 1735563 |
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| Gene Length | 2232 bp |
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| Protein Length | 743 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638054453 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_661020 |
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| Protein GI | 109897765 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.281605 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTTTA GGCTAGGATA TCTTGCGGCG TTCGTTGCGC TTTCAAGTGG TGCGCAAGAG
AGTGCCACTT CAGAAATAGA AAAAATAACG GTCACTGGGA CTAATCAAAA TCGATATGTC
ATAGAAAGTA CAAAAAGCTT AACAGGTTTT CCAGTAGACT TTTTAGACTT ACCTAGAGTC
GTTAACATTA TCCCTGAGCA AGTTATTTTG GATCAAAAAA TTACCGACTT AAGTGAGGCA
TTACGTAATA GTCCTGGTAT TTCTTTGGGT GATGGTTTTG GCGGTACAAA CGATGACTTT
CTTATTCGTG GATTCAGACG CAACACAGTT TACAGAAACG GATTCAGAAG AGAAACAAAC
TTTAAAACAA ACTTGTCAAA CTTAGAATAT ATGCAGGTAG TACGTGGGCC AGCATCTATT
ACTTATGGAC AAGTTGAGCC CGGTGGGTTA GTGGACGTGG TCACTAAAAA GCCTTTGGTC
GAGTCGCGCA TATCAGGTGA AGCAAGGTTT GGTTCATACG ACGATGGATT TTTTCTACTG
GATATTTCCC AACCTATTTC CGAAAAAGCA GGCGTGCGAG TCGTTGCTTC TACTCAAGAT
TCAGAATCCT TCCGAGATTT TACCGATATT TCTCGGGATA CCATTTCTAT ATCTGGTGGA
ATTGACATCA CAGACGCGAC CTCACTCGAC TTGTCTTACG AATACCGAGA TGAGAGTCGC
CCATTAGACA GGGGAACAAT TACTGTACCT ACGGCAGATG GGCGAGAAGT GATAAATGAG
CTTTTAGACA TTCCGCTATC TCGTCGTTTT GGTGAGGCGT TTGAAGTATT CGAAAGCGAG
TTTAATTTTG CTGAAGCCAC ATTAAGTCAT GAGCTAAATG CAGACTGGGC ACTCAAAGTA
AGTGGAGCAA TTGAGAGTAG TTCAGCTAAC GACTTGCAAG CAAGGCCATT AGCCGCAGCC
ATATTTGATG CCGATGGAGC AATTACAGAA GATGGCTTTA TTATTTTTGA CAACCCTGCA
GATATTGCGA CCATATTAGG TTTAGCAACT ACTACAGAAA TATTTGATGA TCCTACTGAT
CAGGTCTTTT TAATAAGGCG CACTGATGGT AGTCAAGAGC AAGATGTTGA TGTTTTTTAT
GCAAATGCTT TGGTGACAGG TCAAGTTGAA CTAGGTAACA CCAACCATCG TCTAGCTTTT
GGCGCAGATT ATCGAGATGG CGAAACGACA CGATACTTTG TCAGTACCGA TTTTACGAAT
GGCGTTTCTG AAGCTATTGG TGGTGACGGC GCATTATTTA ATGTGAGTAA CCCTATTTAT
GGAAATTTAG ATGATAGTTT AAGTATTGAA GGTGCAACCT TGCTTACCTC AATTGAAAAA
AATAGTGGTT TGTTTATTAA TGATTATATG GAAATCACTG ATAACTTAAA TATTTTAGTC
GGTGTGCGTT ATGATTCATT TGAAGTAGAC GGAGAGTCTG CTGAAAATAT TGAAGAAAGC
CAACTTTCTC CTCAACTAGC AGCTAACTAT AACTTAACGG GTACTGCATC AGTGTTTGTC
AGTTACTCTA CTGCTTTTGA ACCTAATACT ACTGTAAACA TACTAACTGG AGAAAATGTA
GCCTTTTCAC CAGAAGAGTC TGAACAATAC GAGATAGGGT TTAAAGCAGA GTTTTTTGAC
GGTGATTTAC AAGCAAGTGC CGCTATTTAC GACATTCAAA AATCAAATGT ATTATCTACT
GATGACAATG ACTTACCTAT TCTTATTGAA GGACAAAGTT CTCAAGGTGG AGAAATCTCG
ATCTCTGGTC AACCGACGGA TGGAATGAAT ATCATTGCTG GTTATGCTTA TGTTGATGCA
GAAATTGGCA CAGGTATTAA TAGTAGCAAT CGCCCTAGAA ATGTCGCTGA AAGTACCTTT
AATCTGTGGG CTTCTTATGA AGTGCAAGGC GGAAAATTTG AAGGGCTAGG ATTAGGCAGT
GGTTTATTTT ATGTGGGTGA CCGTTATGGC AACGATAGTA ATACCTACAA ATTAGATGGC
TACACAGTTG TTGACCTATC TGCTTGGTAC ACAGTTAATA TACCCGGTTT GGGTGCAAGC
GATAGATTAC GTTTCCAGTT GGCGCTAAAA AATATCTTTG ATGAAGAGTA TTATTCGGCG
AGCGGTGGTG ACTTACGTAT CAGTATTGGT ACACCTCGTA CCGCGTTTGC TTCTATTTCT
TTCGACTTTT AA
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| Protein sequence | MSFRLGYLAA FVALSSGAQE SATSEIEKIT VTGTNQNRYV IESTKSLTGF PVDFLDLPRV
VNIIPEQVIL DQKITDLSEA LRNSPGISLG DGFGGTNDDF LIRGFRRNTV YRNGFRRETN
FKTNLSNLEY MQVVRGPASI TYGQVEPGGL VDVVTKKPLV ESRISGEARF GSYDDGFFLL
DISQPISEKA GVRVVASTQD SESFRDFTDI SRDTISISGG IDITDATSLD LSYEYRDESR
PLDRGTITVP TADGREVINE LLDIPLSRRF GEAFEVFESE FNFAEATLSH ELNADWALKV
SGAIESSSAN DLQARPLAAA IFDADGAITE DGFIIFDNPA DIATILGLAT TTEIFDDPTD
QVFLIRRTDG SQEQDVDVFY ANALVTGQVE LGNTNHRLAF GADYRDGETT RYFVSTDFTN
GVSEAIGGDG ALFNVSNPIY GNLDDSLSIE GATLLTSIEK NSGLFINDYM EITDNLNILV
GVRYDSFEVD GESAENIEES QLSPQLAANY NLTGTASVFV SYSTAFEPNT TVNILTGENV
AFSPEESEQY EIGFKAEFFD GDLQASAAIY DIQKSNVLST DDNDLPILIE GQSSQGGEIS
ISGQPTDGMN IIAGYAYVDA EIGTGINSSN RPRNVAESTF NLWASYEVQG GKFEGLGLGS
GLFYVGDRYG NDSNTYKLDG YTVVDLSAWY TVNIPGLGAS DRLRFQLALK NIFDEEYYSA
SGGDLRISIG TPRTAFASIS FDF
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