Gene Patl_1436 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1436 
Symbol 
ID4173593 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp1726714 
End bp1727601 
Gene Length888 bp 
Protein Length295 aa 
Translation table11 
GC content48% 
IMG OID638054446 
ProductLysR family transcriptional regulator 
Protein accessionYP_661013 
Protein GI109897758 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGCAGT GGGAAGGGAT CAACGAATTT GTTTATGTGG CCGAAGCCGA GAGTTTTACT 
CAAGCGTCAA AAAACTTAGC TATCTCTACC GCCCAAGTCA GCCGCCAGAT CAGCGCGCTG
GAAACGCGAT TAAACGTGAA GCTGTTTTAT CGCACCACGC GAAAAGTGTC ACTAACTGAC
GAGGGGCGAC TCTTCTACCA GCATTGTCGC AGCGTACTTG ACGGACTCGA TGCCGCTGAG
CGCGCCATCA CGAATTTACA ATCGAAGCCC CAAGGCAAAA TTCGCCTCAC TGCGCCGGTG
ACCTATGGTG AGCAGCAAAT ACTGCCGTTA GTAAATGATT TTATGCTCCA GTACGCAGAG
GTAGAAGTCA CCGCCTATTT AAGTAATCAA AAAGTCGATT TAGTTGAACA AGGATATGAT
CTGGCCATTC GCCTCGGAAA ATTAAGCGAT TCATCCATGA TGGCAAGAAA ACTCGGGACT
CGCACCAACT CTGTGTGCGC CTCCCCTGCC TATTTGGCAA AATTCGGCTT CCCGCACTCT
TTATCTGAGC TGAGTAAACA CAGCTGCTTG CTAGGCACCC TAGATTATTG GCACTTTCGT
GTCGACGACA AAGAGCGAAA TATCCGCGTG AAAGGCAGGC TAAGGTATAA CAGTGGGTTT
AGTTTAGTGG ACGCTGCGCT CAAAGGCTTG GGCATAGTGC AACTGCCAGA CTACTACGTG
CAAGAACATC TTGAAAGTGG CGCCCTGGTC AGTTTATTAG ATAATTATCG CGAATCCGAA
GAAGGTATTT GGGCGATTTA TCCGCGTAAC AGGCATTTAT CCCCCAAAAT TCGCTCCTTA
GTGGATTATC TAGCTGAGCA TATAGGGTAT ACCAATTCCG TTAAATAA
 
Protein sequence
MMQWEGINEF VYVAEAESFT QASKNLAIST AQVSRQISAL ETRLNVKLFY RTTRKVSLTD 
EGRLFYQHCR SVLDGLDAAE RAITNLQSKP QGKIRLTAPV TYGEQQILPL VNDFMLQYAE
VEVTAYLSNQ KVDLVEQGYD LAIRLGKLSD SSMMARKLGT RTNSVCASPA YLAKFGFPHS
LSELSKHSCL LGTLDYWHFR VDDKERNIRV KGRLRYNSGF SLVDAALKGL GIVQLPDYYV
QEHLESGALV SLLDNYRESE EGIWAIYPRN RHLSPKIRSL VDYLAEHIGY TNSVK