| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1399 |
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| Symbol | |
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| ID | 4173539 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1682716 |
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| End bp | 1683351 |
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| Gene Length | 636 bp |
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| Protein Length | 211 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638054411 |
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| Product | ribonuclease T |
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| Protein accession | YP_660978 |
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| Protein GI | 109897723 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases |
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| TIGRFAM ID | [TIGR01298] ribonuclease T |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0415119 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCAGATC CCCAATTTCT CCTAAAAGAC CGATTCAGAG GCTACTTTCC CGTTATCGTA
GATGTTGAAA CAGCGGGCTT TAATGCGCAA ACCGACGCGT TGCTTGAAGT CGCTGCAATT
ACGACCCAAA TGGACGCCGA TGGCTTTTTA ACCCCAGATA AAACGTTTCA TTATCACGTG
GTTCCCTTTG AAGGGGCTAA CTTAGAAAAA GCGGCGTTAG AGTTCAACGG GATAGATCCT
TGGTGCGCCC TGCGGGGAGC ATTAGATGAA ACAGAAGTCA TGAAAGACTT GTGCAAGCAA
ATTCGCAAAG AGCAAAAGGA CGCTGACTGC CAGCGCTCAG TAATGGTGGC GCACAACGCC
GCATTCGATT TAGGTTTTAT CAATGCCGCT ATCGAACGCA GTAAAATTAA GCGTACGCCG
TTTCACCCAT TCGTATCATT CGATACCACC ACGCTATCAG GTTTAGCGTT GGGGCAAACG
GTATTAGTCA AAGCATGCCA AGCGGCCAAT ATTAGTTTCG ATCAAAGCGA AGCACATTCA
GCCTTATATG ACACCCAGAA AACGGCTGAA CTCTATTGTT ATATTGTTAA TAAATGGCAA
AGCGCATGTG GTTGGCCTAC CCCAGAGCAT GACTAA
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| Protein sequence | MSDPQFLLKD RFRGYFPVIV DVETAGFNAQ TDALLEVAAI TTQMDADGFL TPDKTFHYHV
VPFEGANLEK AALEFNGIDP WCALRGALDE TEVMKDLCKQ IRKEQKDADC QRSVMVAHNA
AFDLGFINAA IERSKIKRTP FHPFVSFDTT TLSGLALGQT VLVKACQAAN ISFDQSEAHS
ALYDTQKTAE LYCYIVNKWQ SACGWPTPEH D
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