| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1398 |
|---|
| Symbol | |
|---|
| ID | 4173538 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 1681996 |
|---|
| End bp | 1682601 |
|---|
| Gene Length | 606 bp |
|---|
| Protein Length | 201 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638054410 |
|---|
| Product | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen |
|---|
| Protein accession | YP_660977 |
|---|
| Protein GI | 109897722 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0450] Peroxiredoxin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.206985 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGTAC TAGTTAGTCG CCCAGCCCCA GATTTTACCG CCGCAGCCGT ATTAGGAAAT
GGCGATATCG TTGAAAACTT CACCCTAAGC GAAGCAATCA AAGGTCAAAA AGCAGTATTG
TTTTTCTACC CTCTTGATTT CACTTTTGTT TGCCCATCTG AATTGATCGC TTTTGATAAG
CGTTACGATG AGTTCAAAAA ACGTGGCGTA GAAGTGATTG GTGTGTCTAT TGATTCTCAG
TTTACCCATA ACGCATGGCG TAACACTGCT ATCAATGACG GCGGTATCGG TAAAGTGAAA
TACGCTATGG TTGCTGATGT TAAGCACGAA ATTTGTCAAG CATACGATGT TGAGCATCCA
GAAGCTGGCG TTGCTTTTCG TGGTTCATTC TTGATCGACG AAGAAGGCGT TGTGCGTCAC
CAAGTGGTCA ACGATCTTCC TTTAGGTCGT AACATTGACG ACATGCTTCG CATGGTTGAT
GCGCTTAACT TCCATGAAGA ACATGGTGAA GTATGCCCAG CCGGTTGGCA AGCTGGTGAA
AAAGGTATGG TAGACAGCCC TGAAGGTGTT GCTAGCTATC TTTCAGAGAA CGCTGATTCG
CTTTAA
|
|---|
| Protein sequence | MSVLVSRPAP DFTAAAVLGN GDIVENFTLS EAIKGQKAVL FFYPLDFTFV CPSELIAFDK
RYDEFKKRGV EVIGVSIDSQ FTHNAWRNTA INDGGIGKVK YAMVADVKHE ICQAYDVEHP
EAGVAFRGSF LIDEEGVVRH QVVNDLPLGR NIDDMLRMVD ALNFHEEHGE VCPAGWQAGE
KGMVDSPEGV ASYLSENADS L
|
|---|
| |