Gene Patl_1375 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1375 
Symbol 
ID4171872 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp1657116 
End bp1658897 
Gene Length1782 bp 
Protein Length593 aa 
Translation table11 
GC content47% 
IMG OID638054388 
Productalpha amylase, catalytic region 
Protein accessionYP_660955 
Protein GI109897700 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0366] Glycosidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATATTGA GCAGAGCATT ATCACTTATT TTTTTTGCTG TGGTTATTAC TGGTTGTGGC 
ACCGCCGAAA ATCAGGATAA GCAGCACACA GTAAAAAGCG AGAGCAAGGT CGCTGGCATC
GATACCGCGA ACAACAAACT GCCAAACGCT AACTATTTGT TGCGTGATGT GCGCGACGAT
GTGTTTTATT TCGTGATGCC GGATAGGTTT AACAATGGTG ACTCAAGCAA TGATAATGGG
GCTGTAGAGG GCGGTATTTC TGCTGGTGGC TTCGATGCAA CGTCAAACCG AGGCTTTCAT
GGTGGTGATA TGCAGGGCAT TGAGCAGAAA CTTGATTACC TGCAAGGCAT GGGGATCACC
GCCATTTGGA TGACGCCCAT ATTGCGCAAT AAAGCGGTTC AAAGGGATGG CGTTGCCCAC
CATGGTTACT GGATAGTGGA TTTCACAGAG ATCGATCCGC ATTTTGGCTC GAACGATGAC
CTTAAAAGCC TAATTGCCAC AGCACATGAA AAAGGCATTA AAGTGTTTTT CGATATCATC
ACTAATCACA CTGCCGACGT GGTGAAGTAT GAAGAGTGCC ATCATGCCAA CGGTGATTTT
AAGGCAGAGA ACCACTGCTT GTATAAATCT TTACAGCAGC TTGCTGAGGG TGACGATTAC
ACGCCTTTCG TGCCGCTTAG GGAGCAAACG GTCAAAGTAC CCGCTTGGCT AAACGATCCG
CAATTTTACC ACAACCAGGG GGATACCACC TTTACTGGGG AGAGCTCGTT AAACGGTGAT
TTCAGTGGAC TCGATGATTT AGATACAGAA AACCCCAAGG TGTTGCAGGG CATGATCGAA
ATCTACAAAG ATTTGATCAA AGAATTTAAA CCCGATGGTT TCAGAATTGA TACAGTGCGC
CATGTGCGCA TGCCATTTTG GCAGACGTTC AGTCCTTCGA TAATGGCTTA TGCGCAAGAG
CAGGGCATCC CTAATTTTCA TATTTTCGGT GAAGTGTATG ACCCAGACCC AGCGCAATTA
AGCCGCTTTA CCACACAAGG TAAGTTGCCA TCCGTGCTGG ATTTCGGTTT TCAACAAGCC
GCTGCTGACG TGTTCTATCG CAAACGTAAC CCCCAAACTA TTGATGCCTT GTTCGCTCAG
GATGATTTAT ATACAGATGA AGACAGCCAA GCGGATTTAT TAATGACTTT TTTAGGTAAT
CACGATATGG GCCGCACCGG TTATTTTATC GAGCAAGGGG TACCTGATGC TAGCAACGAA
GAAAAACTGC AACGCAGTAT TTTATCTCAT GCGTTTATGT ATTTATCTCG CGGTATACCT
GTTGTGTATT ACGCAGACGA GCAGGGGTTT ACCGGTGACG GTAATGACGT AAACGCCAGA
CAAGATATGT TCCCTTCTTT GGTGGCCAGC GACAACGACG ATCCGTTGCT GGGAAGCAGC
GCGAGCACCG CGGATAACAA CTTTGACCCT CTGCACCCGA TTTATCTGGC GCTGGGTGAC
TTAGCGCAAC TAAGGCATCA ACATGAGGCA TTGCGCCGAG GGCAATATGA GAGCCGGTAT
TTTAATGAGG ACTCGATGAT GTTTGCATTT GCTCGTAAAT TACCACAAGG CAAAGAGTAT
TTAGCGGTGT TTAATGCCGG TACTGAAGCC GCTAGCTTGA CGTTGCCTGC GCAATCTACA
CATTATGAAG GGCTGGTCGA AGCGACTAAG TTCAACTTAA GCGATGGTGT GATTAAAGTG
ACCGTACCTG CACTGAGCTT CGCTTTGTAC CAAGCCAAAT AA
 
Protein sequence
MILSRALSLI FFAVVITGCG TAENQDKQHT VKSESKVAGI DTANNKLPNA NYLLRDVRDD 
VFYFVMPDRF NNGDSSNDNG AVEGGISAGG FDATSNRGFH GGDMQGIEQK LDYLQGMGIT
AIWMTPILRN KAVQRDGVAH HGYWIVDFTE IDPHFGSNDD LKSLIATAHE KGIKVFFDII
TNHTADVVKY EECHHANGDF KAENHCLYKS LQQLAEGDDY TPFVPLREQT VKVPAWLNDP
QFYHNQGDTT FTGESSLNGD FSGLDDLDTE NPKVLQGMIE IYKDLIKEFK PDGFRIDTVR
HVRMPFWQTF SPSIMAYAQE QGIPNFHIFG EVYDPDPAQL SRFTTQGKLP SVLDFGFQQA
AADVFYRKRN PQTIDALFAQ DDLYTDEDSQ ADLLMTFLGN HDMGRTGYFI EQGVPDASNE
EKLQRSILSH AFMYLSRGIP VVYYADEQGF TGDGNDVNAR QDMFPSLVAS DNDDPLLGSS
ASTADNNFDP LHPIYLALGD LAQLRHQHEA LRRGQYESRY FNEDSMMFAF ARKLPQGKEY
LAVFNAGTEA ASLTLPAQST HYEGLVEATK FNLSDGVIKV TVPALSFALY QAK