Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1375 |
Symbol | |
ID | 4171872 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 1657116 |
End bp | 1658897 |
Gene Length | 1782 bp |
Protein Length | 593 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638054388 |
Product | alpha amylase, catalytic region |
Protein accession | YP_660955 |
Protein GI | 109897700 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATATTGA GCAGAGCATT ATCACTTATT TTTTTTGCTG TGGTTATTAC TGGTTGTGGC ACCGCCGAAA ATCAGGATAA GCAGCACACA GTAAAAAGCG AGAGCAAGGT CGCTGGCATC GATACCGCGA ACAACAAACT GCCAAACGCT AACTATTTGT TGCGTGATGT GCGCGACGAT GTGTTTTATT TCGTGATGCC GGATAGGTTT AACAATGGTG ACTCAAGCAA TGATAATGGG GCTGTAGAGG GCGGTATTTC TGCTGGTGGC TTCGATGCAA CGTCAAACCG AGGCTTTCAT GGTGGTGATA TGCAGGGCAT TGAGCAGAAA CTTGATTACC TGCAAGGCAT GGGGATCACC GCCATTTGGA TGACGCCCAT ATTGCGCAAT AAAGCGGTTC AAAGGGATGG CGTTGCCCAC CATGGTTACT GGATAGTGGA TTTCACAGAG ATCGATCCGC ATTTTGGCTC GAACGATGAC CTTAAAAGCC TAATTGCCAC AGCACATGAA AAAGGCATTA AAGTGTTTTT CGATATCATC ACTAATCACA CTGCCGACGT GGTGAAGTAT GAAGAGTGCC ATCATGCCAA CGGTGATTTT AAGGCAGAGA ACCACTGCTT GTATAAATCT TTACAGCAGC TTGCTGAGGG TGACGATTAC ACGCCTTTCG TGCCGCTTAG GGAGCAAACG GTCAAAGTAC CCGCTTGGCT AAACGATCCG CAATTTTACC ACAACCAGGG GGATACCACC TTTACTGGGG AGAGCTCGTT AAACGGTGAT TTCAGTGGAC TCGATGATTT AGATACAGAA AACCCCAAGG TGTTGCAGGG CATGATCGAA ATCTACAAAG ATTTGATCAA AGAATTTAAA CCCGATGGTT TCAGAATTGA TACAGTGCGC CATGTGCGCA TGCCATTTTG GCAGACGTTC AGTCCTTCGA TAATGGCTTA TGCGCAAGAG CAGGGCATCC CTAATTTTCA TATTTTCGGT GAAGTGTATG ACCCAGACCC AGCGCAATTA AGCCGCTTTA CCACACAAGG TAAGTTGCCA TCCGTGCTGG ATTTCGGTTT TCAACAAGCC GCTGCTGACG TGTTCTATCG CAAACGTAAC CCCCAAACTA TTGATGCCTT GTTCGCTCAG GATGATTTAT ATACAGATGA AGACAGCCAA GCGGATTTAT TAATGACTTT TTTAGGTAAT CACGATATGG GCCGCACCGG TTATTTTATC GAGCAAGGGG TACCTGATGC TAGCAACGAA GAAAAACTGC AACGCAGTAT TTTATCTCAT GCGTTTATGT ATTTATCTCG CGGTATACCT GTTGTGTATT ACGCAGACGA GCAGGGGTTT ACCGGTGACG GTAATGACGT AAACGCCAGA CAAGATATGT TCCCTTCTTT GGTGGCCAGC GACAACGACG ATCCGTTGCT GGGAAGCAGC GCGAGCACCG CGGATAACAA CTTTGACCCT CTGCACCCGA TTTATCTGGC GCTGGGTGAC TTAGCGCAAC TAAGGCATCA ACATGAGGCA TTGCGCCGAG GGCAATATGA GAGCCGGTAT TTTAATGAGG ACTCGATGAT GTTTGCATTT GCTCGTAAAT TACCACAAGG CAAAGAGTAT TTAGCGGTGT TTAATGCCGG TACTGAAGCC GCTAGCTTGA CGTTGCCTGC GCAATCTACA CATTATGAAG GGCTGGTCGA AGCGACTAAG TTCAACTTAA GCGATGGTGT GATTAAAGTG ACCGTACCTG CACTGAGCTT CGCTTTGTAC CAAGCCAAAT AA
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Protein sequence | MILSRALSLI FFAVVITGCG TAENQDKQHT VKSESKVAGI DTANNKLPNA NYLLRDVRDD VFYFVMPDRF NNGDSSNDNG AVEGGISAGG FDATSNRGFH GGDMQGIEQK LDYLQGMGIT AIWMTPILRN KAVQRDGVAH HGYWIVDFTE IDPHFGSNDD LKSLIATAHE KGIKVFFDII TNHTADVVKY EECHHANGDF KAENHCLYKS LQQLAEGDDY TPFVPLREQT VKVPAWLNDP QFYHNQGDTT FTGESSLNGD FSGLDDLDTE NPKVLQGMIE IYKDLIKEFK PDGFRIDTVR HVRMPFWQTF SPSIMAYAQE QGIPNFHIFG EVYDPDPAQL SRFTTQGKLP SVLDFGFQQA AADVFYRKRN PQTIDALFAQ DDLYTDEDSQ ADLLMTFLGN HDMGRTGYFI EQGVPDASNE EKLQRSILSH AFMYLSRGIP VVYYADEQGF TGDGNDVNAR QDMFPSLVAS DNDDPLLGSS ASTADNNFDP LHPIYLALGD LAQLRHQHEA LRRGQYESRY FNEDSMMFAF ARKLPQGKEY LAVFNAGTEA ASLTLPAQST HYEGLVEATK FNLSDGVIKV TVPALSFALY QAK
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