| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1363 |
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| Symbol | |
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| ID | 4171860 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1639221 |
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| End bp | 1639937 |
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| Gene Length | 717 bp |
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| Protein Length | 238 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638054376 |
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| Product | pseudouridine synthase Rlu family protein |
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| Protein accession | YP_660943 |
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| Protein GI | 109897688 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR01621] pseudouridine synthase Rlu family protein, TIGR01621 |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0824413 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAATAGCT CCCCTGCCAC GTCTATTCGT GTTGTTTTAG ATCACCCTGA TTTTTTTGTT
ATCGACAAGC CCCATGGAAT AAGCGTTCAA AATGAATTGG ACGCCCAAGG TATCCTGCCT
GTGGTTTGCG CTCAGCAAGC AGTCGACAAA CTCTGGCTGG TACACCGCTT AGACAAAGTG
ACGTCAGGTT TACTGATTTT GGCCAAGCAT GCTCAAGCAG CAAGCACACT GGGCAAACTG
TTCGAAACAC GTGCAATTGA AAAGTATTAC CTCGCCTTAG GTGGCTCAAA ACCCAAAAAA
AAGCAGGGCA CCATCAGCGG TGCTATGAAG AAAATTCGCG ATGGGAAGTG GGCGTTCAGT
CAAGACGGTG CTGGGATAGC GACCACACAG TTTTTCAGTA AAAGCGCTTC AGCGGGTATT
CGTCTCTTCT TGCTAAAACC GTTAACGGGC AAAACCCACC AGTTGCGTGT CATGCTAAAA
AGCTTAGGCT GCCCCATTTT AGGTGATGCT TTATATAAGG GCACTGAGCA AGATAGGACC
TACCTACATG CTTATTGCTT GCGCTTCGAA TACCAAGGGC AACTGATACA GCTTACCTGC
CTCCCCTCCA GCGGCGAGCT TTTTACCAAC GAAGACTGCC AAGTGGCTAT GCAAGAGTAT
ATTGAGCCAT GGTTACTATC TTGGCCGAAA ACAAAACCAA CTGCCGCCAG TAAATGA
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| Protein sequence | MNSSPATSIR VVLDHPDFFV IDKPHGISVQ NELDAQGILP VVCAQQAVDK LWLVHRLDKV
TSGLLILAKH AQAASTLGKL FETRAIEKYY LALGGSKPKK KQGTISGAMK KIRDGKWAFS
QDGAGIATTQ FFSKSASAGI RLFLLKPLTG KTHQLRVMLK SLGCPILGDA LYKGTEQDRT
YLHAYCLRFE YQGQLIQLTC LPSSGELFTN EDCQVAMQEY IEPWLLSWPK TKPTAASK
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