| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1334 |
|---|
| Symbol | |
|---|
| ID | 4172798 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 1598187 |
|---|
| End bp | 1598954 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638054341 |
|---|
| Product | putative lipoprotein |
|---|
| Protein accession | YP_660914 |
|---|
| Protein GI | 109897659 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4105] DNA uptake lipoprotein |
|---|
| TIGRFAM ID | [TIGR03302] outer membrane assembly lipoprotein YfiO |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000000708503 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGAGAA AGTTATCGTT ACCCAAGATT TTTCTAGCCG CTGCGATCAT CGCACTAGGT
GGCTGTTCGT CCTCTCCAGA TGAAGAAGAA GTCGTAGTCA ACAACCGTAG TGCTCAGTCT
TTGTATGAAG ATGCGAAAGA AAAAATGGCA ATTGGTAACT TCAATGCCGC GACTGCAACA
CTCAGCGCAT TAGATTCCAG ATACCCCTTT GGTCCTTTAT CCAATCAGGT TCAGTTGGAC
TTGATTTATG CATATTACAA GTCAGGTAAA GTAAATGAAG CGATATCAAC TATCGACCGT
TTCACTCGCT TGAACCCAAA CCATGCTGAC GTTGATTACG CTATTTATAT GCGTGGATTA
ACCAACATGG AATCCGATAA AAACCTATTC CAAGAATTGG TCGGTATAGA CCGCTCAGAT
CGCGATCCAA GTAAGTCTCG TGAAGCTTTC GAAGATTTCA GGCGTTTAAT CGACAAATAC
CCTGACAGCA AGTATGCCGC TGATGCACAA AAACGTATGT TGCATATCAA AAGTCGCTTA
GCAAAATATG AAATTGCTAT TGCACGCTTT TATATGCGCC GTGAAGCGTT TGTTGCTGCA
GCCAACCGCG GGCGCTATGT TTTAGAGTAC TACCCTGATA CAGATCATGT ACAAGAAGCA
CTAGAGATTA TGGTGGAGTG TTACGACCAA CTTAAGTTAG ACGAATTGAA AAATAACGTC
ATGAAAACAC TTAAGTTGAA CTACCCTGAT AGCAGCTTCA TTAGCTAA
|
|---|
| Protein sequence | MMRKLSLPKI FLAAAIIALG GCSSSPDEEE VVVNNRSAQS LYEDAKEKMA IGNFNAATAT
LSALDSRYPF GPLSNQVQLD LIYAYYKSGK VNEAISTIDR FTRLNPNHAD VDYAIYMRGL
TNMESDKNLF QELVGIDRSD RDPSKSREAF EDFRRLIDKY PDSKYAADAQ KRMLHIKSRL
AKYEIAIARF YMRREAFVAA ANRGRYVLEY YPDTDHVQEA LEIMVECYDQ LKLDELKNNV
MKTLKLNYPD SSFIS
|
|---|
| |