| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1332 |
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| Symbol | |
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| ID | 4172796 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1596829 |
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| End bp | 1597443 |
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| Gene Length | 615 bp |
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| Protein Length | 204 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638054339 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_660912 |
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| Protein GI | 109897657 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0214235 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCTAGTCG GAATCCCTTT GGAATCAAAA CATTCACATG CTGTTGTACC AAAAGATTGT
GCGGATGAAA TGTCATCGTA TCTTGTGTTG GTAGGGCAGT CTCGTTGCAA ACGTTCTTTC
GCAGAGATAT TTAATTATTT CGCGCCACGT CTTCGCTCGT ATGCCCTAAA ACAAATGGGT
AATGAGGCTT TAGCTATGGA ATTGGTGCAA GACACCATGT CGAATGTGTG GCAGAAATCT
CACTTATTCA ATGCCGAGAA AGGTGCTCCC TCCACTTGGA TTTTCACTAT TGCACGTAAT
ATCCGCTTCG ACATGTTGCG CAAACAGCGT AACCGTAAAG AAGATATCTG CGCTGACGAT
CTATGGCCAG TGCTTTGCGA GCAAACCGCT GATGTAAACG AAGTCTCATT AGATGAGCAA
ATAACACTTC AGCAGCTCGG GGTTATATTC GAAGACCTGC CGAAAAAGCA ACGCGAAGTG
ATTGAAGCAA TTTATATTGA AGGTAAATCT CAGCAGGAAG TCGCTGACCA ATTTGACATC
CCTCTGGGGA CGGTCAAATC CAGAACCCGT CTTGCTTTGC AGCGATTGAA AGAGATGTTA
AAAGATAATG ATTAA
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| Protein sequence | MLVGIPLESK HSHAVVPKDC ADEMSSYLVL VGQSRCKRSF AEIFNYFAPR LRSYALKQMG
NEALAMELVQ DTMSNVWQKS HLFNAEKGAP STWIFTIARN IRFDMLRKQR NRKEDICADD
LWPVLCEQTA DVNEVSLDEQ ITLQQLGVIF EDLPKKQREV IEAIYIEGKS QQEVADQFDI
PLGTVKSRTR LALQRLKEML KDND
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