Gene Patl_1314 details

Gene Information

• Locus tag: Patl_1314
• Symbol: ribH
• ID: 4173362
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 1582254
• End bp: 1582730
• Gene Length: 477 bp
• Protein Length: 158 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 638054321
• Product: 6,7-dimethyl-8-ribityllumazine synthase
• Protein accession: YP_660894
• Protein GI: 109897639
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0054] Riboflavin synthase beta-chain
• TIGRFAM ID: [TIGR00114] 6,7-dimethyl-8-ribityllumazine synthase

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATATCA TTGAAGGTAA TATTCGCGCA ACAGGCAAAA AATTTGCGTT GGTTGTGTCA 
CGTTTCAACA GTTTCGTTGT TGAGAGTTTG GTTGAAGGCG CATTAGATAC ACTTGAGCGT 
CACGGTGAAG TAAACAGCCA AGATATCACT TTGGTTCGCG TGCCTGGTGC ATACGAGTTG 
CCTATCGCGG CTAAAAAGCT AGCGGAAAAA GGAACCTTTG ATGGGATCAT CGCTCTAGGC 
GCTGTTATCC GTGGCGGTAC ACCACACTTC GAATTTGTTG CTGGTGAATG CAACAAAGGT 
TTAGCTCAGG TGTCACTTGA ATTCGGTATT CCGGTTTCTT TTGGCGTTAT CACCACTGAC 
AGTATCGAGC AGGCTATTGA GCGCTCTGGT ACTAAAGCAG GTAACAAAGG CGCTGAAGCA 
GCATTAGGTG CACTTGAAAT GGTTAACGTT ATGGCCAATA TCGAAGGGGC AGAGTAG 

 

Protein sequence

MNIIEGNIRA TGKKFALVVS RFNSFVVESL VEGALDTLER HGEVNSQDIT LVRVPGAYEL 
PIAAKKLAEK GTFDGIIALG AVIRGGTPHF EFVAGECNKG LAQVSLEFGI PVSFGVITTD 
SIEQAIERSG TKAGNKGAEA ALGALEMVNV MANIEGAE