Gene Patl_1313 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1313 
Symbol 
ID4173361 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand+ 
Start bp1580907 
End bp1582004 
Gene Length1098 bp 
Protein Length365 aa 
Translation table11 
GC content47% 
IMG OID638054320 
ProductGTP cyclohydrolase II 
Protein accessionYP_660893 
Protein GI109897638 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0108] 3,4-dihydroxy-2-butanone 4-phosphate synthase
[COG0807] GTP cyclohydrolase II 
TIGRFAM ID[TIGR00506] 3,4-dihydroxy-2-butanone 4-phosphate synthase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAATGA ACACAACAGC AGAAATTATC GAAGACATTC GTCTTGGCAA AATGGTTATC 
TTGATGGATG ACGAAGACCG TGAAAACGAA GGCGATTTAA TTATGGCCGC TGAGTGCGTC 
ACCCCAAAAG ACATTAACTT TATGGTGACT CACGCTCGGG GGTTGGTTTG CTTGCCCATG 
ACAGCGGAGC GTTGTAAACG CTTGAATTTG CCTTTGATGG TGGATAACAA CGGTGCACAG 
TTCTCGACTA ACTTTACGGT ATCAATCGAA GCTCGTGAAG GGGTCACCAC GGGTATTTCT 
GCTGCGGATC GTGCGCGCAC TATTTTAGCG GCGGTTGCTA CGGATGCCAC GGCCAACGAT 
ATTGTGCAAC CCGGGCATAT ATTCCCTCTT ATTGCCAAAG AAGGTGGGGT GCTAAATCGC 
GCTGGGCATA CCGAAGCGGG TGTTGATTTA CCGCGTTTAG CTGGCTTGGA GCCTGCCTCA 
GTTATCGTTG AAATACTCAA CGAAGACGGC ACCATGGCCC GTGGCCCTGA GTTACAAGAG 
TTTGCTAAAA AGCATGACCT GAAAATTGGC ACAATCGCTG ATTTGATTGA ATATCGTAAC 
TTAAATGAAA CCACCATCGA GCAAGTGGCA AAATGCAAAT TGCCGACTGA GTACGGTGAG 
TTCGATTTGG TTACTTTTAA AGACTCGATT GATAACCAAG TACATTTCGC GTTGAGTAAA 
GGCGAAATTA GTCCTGATGA GCCAACGTTG GTGCGTGTAC ATTTGCACAA TACCTTGAGT 
GATTTGCTGG GTTCAGAGCG AGCAATTGAG CGCAGCATGA ATTTACCCCA AGCACTAAAA 
CGCATCGCTG CCGAAGGTGG TGTTCTAGTA TTACTGGGTA AAGATGAAGA TTTGCTGACG 
CAAGTAAAAC AGTTTGAAGC CGAAGATAAT GGTGAAAAGC CTGTTGGCGC AGCATGGAGC 
GGCACGTCTC GCACTGTGGG TGTCGGTAGT CAAATACTTG CCAGCTTAGG CGTGAAAAAA 
ATGCGCTTGC TAAGTCGACC TAAAAAATAT CATGCCCTAT CTGGTTACGG CTTAGAAGTG 
GTTGAATACG TAGATTAG
 
Protein sequence
MAMNTTAEII EDIRLGKMVI LMDDEDRENE GDLIMAAECV TPKDINFMVT HARGLVCLPM 
TAERCKRLNL PLMVDNNGAQ FSTNFTVSIE AREGVTTGIS AADRARTILA AVATDATAND 
IVQPGHIFPL IAKEGGVLNR AGHTEAGVDL PRLAGLEPAS VIVEILNEDG TMARGPELQE 
FAKKHDLKIG TIADLIEYRN LNETTIEQVA KCKLPTEYGE FDLVTFKDSI DNQVHFALSK 
GEISPDEPTL VRVHLHNTLS DLLGSERAIE RSMNLPQALK RIAAEGGVLV LLGKDEDLLT 
QVKQFEAEDN GEKPVGAAWS GTSRTVGVGS QILASLGVKK MRLLSRPKKY HALSGYGLEV 
VEYVD