Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1312 |
Symbol | |
ID | 4173360 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 1580146 |
End bp | 1580811 |
Gene Length | 666 bp |
Protein Length | 221 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638054319 |
Product | riboflavin synthase subunit alpha |
Protein accession | YP_660892 |
Protein GI | 109897637 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0307] Riboflavin synthase alpha chain |
TIGRFAM ID | [TIGR00187] riboflavin synthase, alpha subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.903669 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTACCG GAATAATTGA AGATGTGGGG CACATCGAAT CCTTAACCCC AACGGGCGAT GACATTCGCT TGCGCATACG GGTAAATAAA CTGGATATGT CGGATGTGGC CCTTGGCGAC AGTATCGCCA ATAACGGTGT GTGTTTAACC GTGGTAGACA TGAACTCGAG CGGCTTTAGT GCTGACGTGT CGCACGAGAC CATCAAGCGC AGCGGTTTTG CCGATTATAA AGCGGGTAGT AAGGTGAACT TAGAAAAGGC CATGTTACCG ACATCCCGCT TTGGTGGGCA CATCGTCAGC GGGCATGTTG ATGGTGTGGG CGAAGTCGTT TCCGTCAACC CTGTTGGGCG TTACGTAGAA ATCTGGGTGC AAGCACCAAA AGATTTAGCC CGTTACTTAG CGGAAAAAGG CTCGATTACT GTAGACGGTG TCAGCTTGAC GGTGAATGCT GTAGAGGGTG CCAAATTCTT GATTACTCTT ATTCCCCACA GCCTGGAAGA AACGATTATT GGTGGCTACA AGAAGGGCAC TAAAATTAAT TTAGAAGTGG ACGTGGTTGC CCGTTACCTA GAGCGATTAA TGCTCGGCGA CAAAGCCGCT GAAACAGGCC AACAAAAATC AGATATCAGC ATGGTATTTT TAGCTGAAAA TGGCTTTTTA CGTTAG
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Protein sequence | MFTGIIEDVG HIESLTPTGD DIRLRIRVNK LDMSDVALGD SIANNGVCLT VVDMNSSGFS ADVSHETIKR SGFADYKAGS KVNLEKAMLP TSRFGGHIVS GHVDGVGEVV SVNPVGRYVE IWVQAPKDLA RYLAEKGSIT VDGVSLTVNA VEGAKFLITL IPHSLEETII GGYKKGTKIN LEVDVVARYL ERLMLGDKAA ETGQQKSDIS MVFLAENGFL R
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