Gene Patl_1291 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1291 
Symbol 
ID4173339 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp1552906 
End bp1554900 
Gene Length1995 bp 
Protein Length664 aa 
Translation table11 
GC content47% 
IMG OID638054298 
Productcytochrome-c oxidase 
Protein accessionYP_660871 
Protein GI109897616 
COG category[C] Energy production and conversion 
COG ID[COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 
TIGRFAM ID[TIGR02843] cytochrome o ubiquinol oxidase, subunit I 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGCTAT TAGGAAATTT ATCCCTGGAG GCCATTCCGT ACCACGAACC TATTATCATG 
GTAACGCTGG CAGTCATTGG TGTCATTGGC TTGGCCATTG TTGGTCTTAT TACTAAATAT
CGAAAGTGGG GCGTGCTTTG GCACAACTGG TTGACGTCAG TTGATCATAA ACGCTTAGGT
ATCATGTACA TTATTCTTGC ATTAGTCATG CTGATCCGTG GCTTCTCTGA CGCGATAATG
ATGCGCACTC AACTCGCTAT GGCGACTAAC GGTGCTGAGG GATATTTGCC CCCAGAGCAC
TACGACCAAA TATTTACCGC CCATGGCATT ATCATGATCA TCTTCATGGC CATGCCTTTT
ATGATTGGTT TAATGAACAT TGTACTGCCG CTGCAAATTG GCGCGCGAGA CGTGGCATTC
CCTTTTATGA ACAACTTGAG TTTCTGGTTA GCCGCTGCAG GTGCTGTGTT GATCAATATC
TCTTTGGGTT TAGGTGAGTT CGCCAAAACC GGTTGGTTGG CCTATCCGCC ATTATCGGAG
ATGTCCTTTA GCCCTGGGGT GGGGGTCGAT TATTATATCT GGGCCTTGCA GATATCCGGG
ATCGGAACAT TGCTTACCGG CGTCAACTTT TTAGCCACCG TGTTTAAAAT GCGCGCCCCT
GGCATGAAGT TGATGCAAAT GCCCATTTTT ACTTGGGCCT GTACTTGGGC GAATATATTA
ATTGTGGCCT CGTTCCCGAT TCTAACCGCG GTGCTCGGTT TACTGACACT TGACCGTTAT
TTAGATTTTC ACTTCTTCAC CAATGATGGT GGCGGTAACG CTATGATGTA CATCAACCTG
TTTTGGGCGT GGGGTCACCC TGAAGTGTAT ATATTGGTGC TGCCTGCATT TGGTATTTTC
TCTGAGGTTA TTTCAACCTT TACCGGTAAG CGCTTGTTTG GCTACACCTC AATGGTGTGG
GCAAGTGGCG CGATTTCGAT TTTAGGCTTC GTGGTGTGGC TGCATCACTT CTTTACCATG
GGTTCAAGTG CTGACGTAAA TGCCTTCTTT GGGGTAATGA CCATGATCAT TGCCATACCC
ACGGGGGTGA AGTTATTCAA CTGGTTGTTC ACTATGTACC GTGGTCGCTT ACGCATAACA
GTGCCGGTTT TATGGACCTT AGGCTTTATG GTTACTTTCA GTATCGGTGG TATGACAGGG
GTGTTACTTG CTGTGCCTGG TGCTGATTAC GTATTACATA ACAGCTTATT TTTAGTGGCT
CATTTTCATA ACACCATCAT AGGTGGTGCG GTGTTTGGTT ACATGGCGGG CTTTGCGTTT
TGGTTCCCAA AAGCCACAGG TTTTCATTTG AACGAGCGTT TAGGTAAATA CTCTTTCTGG
TGCTGGCAAA TTGGTTTCTA CGTGGCGTTT ATGCCGCTTT ACGTGCTTGG CTTCCTGGGT
ATGACCCGTC GTTTAAATCA TACCAACAAC CCAGATTGGA ACATTTGGTT GTATATCGCG
GCGTTAGGCG CAGTGATTAT CTTTGTAGGT ATCATTCTGC AATTTGTGCA GCTTTACGTG
AGTATTCGCG ATCGTGAACA AAACCCAGAT GTAGATGGCG ATCCATGGAA TGGTCACACA
CTCGAATGGT CAACAGCGTC ACCACCTCAG TTCTATAACT TTGCCGTTCT ACCTAAGGTA
CATGACATAG ACGCGTTCAC AGACATGAAA GAAAAAGGTA TTGAGTATCA GGCACCCGAT
GAATATATGC CAATTCACAT GCCACGGAAT ACCGCTGCGG GTATGCAAAT CGCGGGGGCG
GCTGGCGTCG TTGGATTCGC CTTGATCTGG CATATTTGGT GGTTAGCCAT CGTTGGCTCA
CTGGGTATGG TAGTCGCGTT AATTGCACGC TGTTATGCCA AAGACGTGGA CTATTATGTT
GAGCCGCAAG AAGTGGCTGA AATTGAACGA GCACACTTAG CCAGTGTGGC CACAGTGAAG
GAGGAAGCGT TATGA
 
Protein sequence
MSLLGNLSLE AIPYHEPIIM VTLAVIGVIG LAIVGLITKY RKWGVLWHNW LTSVDHKRLG 
IMYIILALVM LIRGFSDAIM MRTQLAMATN GAEGYLPPEH YDQIFTAHGI IMIIFMAMPF
MIGLMNIVLP LQIGARDVAF PFMNNLSFWL AAAGAVLINI SLGLGEFAKT GWLAYPPLSE
MSFSPGVGVD YYIWALQISG IGTLLTGVNF LATVFKMRAP GMKLMQMPIF TWACTWANIL
IVASFPILTA VLGLLTLDRY LDFHFFTNDG GGNAMMYINL FWAWGHPEVY ILVLPAFGIF
SEVISTFTGK RLFGYTSMVW ASGAISILGF VVWLHHFFTM GSSADVNAFF GVMTMIIAIP
TGVKLFNWLF TMYRGRLRIT VPVLWTLGFM VTFSIGGMTG VLLAVPGADY VLHNSLFLVA
HFHNTIIGGA VFGYMAGFAF WFPKATGFHL NERLGKYSFW CWQIGFYVAF MPLYVLGFLG
MTRRLNHTNN PDWNIWLYIA ALGAVIIFVG IILQFVQLYV SIRDREQNPD VDGDPWNGHT
LEWSTASPPQ FYNFAVLPKV HDIDAFTDMK EKGIEYQAPD EYMPIHMPRN TAAGMQIAGA
AGVVGFALIW HIWWLAIVGS LGMVVALIAR CYAKDVDYYV EPQEVAEIER AHLASVATVK
EEAL