Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1291 |
Symbol | |
ID | 4173339 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 1552906 |
End bp | 1554900 |
Gene Length | 1995 bp |
Protein Length | 664 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638054298 |
Product | cytochrome-c oxidase |
Protein accession | YP_660871 |
Protein GI | 109897616 |
COG category | [C] Energy production and conversion |
COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
TIGRFAM ID | [TIGR02843] cytochrome o ubiquinol oxidase, subunit I |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTCGCTAT TAGGAAATTT ATCCCTGGAG GCCATTCCGT ACCACGAACC TATTATCATG GTAACGCTGG CAGTCATTGG TGTCATTGGC TTGGCCATTG TTGGTCTTAT TACTAAATAT CGAAAGTGGG GCGTGCTTTG GCACAACTGG TTGACGTCAG TTGATCATAA ACGCTTAGGT ATCATGTACA TTATTCTTGC ATTAGTCATG CTGATCCGTG GCTTCTCTGA CGCGATAATG ATGCGCACTC AACTCGCTAT GGCGACTAAC GGTGCTGAGG GATATTTGCC CCCAGAGCAC TACGACCAAA TATTTACCGC CCATGGCATT ATCATGATCA TCTTCATGGC CATGCCTTTT ATGATTGGTT TAATGAACAT TGTACTGCCG CTGCAAATTG GCGCGCGAGA CGTGGCATTC CCTTTTATGA ACAACTTGAG TTTCTGGTTA GCCGCTGCAG GTGCTGTGTT GATCAATATC TCTTTGGGTT TAGGTGAGTT CGCCAAAACC GGTTGGTTGG CCTATCCGCC ATTATCGGAG ATGTCCTTTA GCCCTGGGGT GGGGGTCGAT TATTATATCT GGGCCTTGCA GATATCCGGG ATCGGAACAT TGCTTACCGG CGTCAACTTT TTAGCCACCG TGTTTAAAAT GCGCGCCCCT GGCATGAAGT TGATGCAAAT GCCCATTTTT ACTTGGGCCT GTACTTGGGC GAATATATTA ATTGTGGCCT CGTTCCCGAT TCTAACCGCG GTGCTCGGTT TACTGACACT TGACCGTTAT TTAGATTTTC ACTTCTTCAC CAATGATGGT GGCGGTAACG CTATGATGTA CATCAACCTG TTTTGGGCGT GGGGTCACCC TGAAGTGTAT ATATTGGTGC TGCCTGCATT TGGTATTTTC TCTGAGGTTA TTTCAACCTT TACCGGTAAG CGCTTGTTTG GCTACACCTC AATGGTGTGG GCAAGTGGCG CGATTTCGAT TTTAGGCTTC GTGGTGTGGC TGCATCACTT CTTTACCATG GGTTCAAGTG CTGACGTAAA TGCCTTCTTT GGGGTAATGA CCATGATCAT TGCCATACCC ACGGGGGTGA AGTTATTCAA CTGGTTGTTC ACTATGTACC GTGGTCGCTT ACGCATAACA GTGCCGGTTT TATGGACCTT AGGCTTTATG GTTACTTTCA GTATCGGTGG TATGACAGGG GTGTTACTTG CTGTGCCTGG TGCTGATTAC GTATTACATA ACAGCTTATT TTTAGTGGCT CATTTTCATA ACACCATCAT AGGTGGTGCG GTGTTTGGTT ACATGGCGGG CTTTGCGTTT TGGTTCCCAA AAGCCACAGG TTTTCATTTG AACGAGCGTT TAGGTAAATA CTCTTTCTGG TGCTGGCAAA TTGGTTTCTA CGTGGCGTTT ATGCCGCTTT ACGTGCTTGG CTTCCTGGGT ATGACCCGTC GTTTAAATCA TACCAACAAC CCAGATTGGA ACATTTGGTT GTATATCGCG GCGTTAGGCG CAGTGATTAT CTTTGTAGGT ATCATTCTGC AATTTGTGCA GCTTTACGTG AGTATTCGCG ATCGTGAACA AAACCCAGAT GTAGATGGCG ATCCATGGAA TGGTCACACA CTCGAATGGT CAACAGCGTC ACCACCTCAG TTCTATAACT TTGCCGTTCT ACCTAAGGTA CATGACATAG ACGCGTTCAC AGACATGAAA GAAAAAGGTA TTGAGTATCA GGCACCCGAT GAATATATGC CAATTCACAT GCCACGGAAT ACCGCTGCGG GTATGCAAAT CGCGGGGGCG GCTGGCGTCG TTGGATTCGC CTTGATCTGG CATATTTGGT GGTTAGCCAT CGTTGGCTCA CTGGGTATGG TAGTCGCGTT AATTGCACGC TGTTATGCCA AAGACGTGGA CTATTATGTT GAGCCGCAAG AAGTGGCTGA AATTGAACGA GCACACTTAG CCAGTGTGGC CACAGTGAAG GAGGAAGCGT TATGA
|
Protein sequence | MSLLGNLSLE AIPYHEPIIM VTLAVIGVIG LAIVGLITKY RKWGVLWHNW LTSVDHKRLG IMYIILALVM LIRGFSDAIM MRTQLAMATN GAEGYLPPEH YDQIFTAHGI IMIIFMAMPF MIGLMNIVLP LQIGARDVAF PFMNNLSFWL AAAGAVLINI SLGLGEFAKT GWLAYPPLSE MSFSPGVGVD YYIWALQISG IGTLLTGVNF LATVFKMRAP GMKLMQMPIF TWACTWANIL IVASFPILTA VLGLLTLDRY LDFHFFTNDG GGNAMMYINL FWAWGHPEVY ILVLPAFGIF SEVISTFTGK RLFGYTSMVW ASGAISILGF VVWLHHFFTM GSSADVNAFF GVMTMIIAIP TGVKLFNWLF TMYRGRLRIT VPVLWTLGFM VTFSIGGMTG VLLAVPGADY VLHNSLFLVA HFHNTIIGGA VFGYMAGFAF WFPKATGFHL NERLGKYSFW CWQIGFYVAF MPLYVLGFLG MTRRLNHTNN PDWNIWLYIA ALGAVIIFVG IILQFVQLYV SIRDREQNPD VDGDPWNGHT LEWSTASPPQ FYNFAVLPKV HDIDAFTDMK EKGIEYQAPD EYMPIHMPRN TAAGMQIAGA AGVVGFALIW HIWWLAIVGS LGMVVALIAR CYAKDVDYYV EPQEVAEIER AHLASVATVK EEAL
|
| |