Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1270 |
Symbol | |
ID | 4173281 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 1523214 |
End bp | 1525187 |
Gene Length | 1974 bp |
Protein Length | 657 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638054277 |
Product | sodium/hydrogen exchanger |
Protein accession | YP_660850 |
Protein GI | 109897595 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0475] Kef-type K+ transport systems, membrane components [COG0569] K+ transport systems, NAD-binding component |
TIGRFAM ID | [TIGR00932] transporter, monovalent cation:proton antiporter-2 (CPA2) family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCATGGGA TTTTTGCAAA TATTTTACTC TTGATGGCGG TGGCGGTTGC CAGTGTCTGG TTATTTAAAC GCATAAATTT GCCGCCTATT TTGGCGTACC TCTTTTGCGG GATCCTCGCA GGCCCTGATT TACTTGCTTT ATTTGAACAC CCTGAAGATA TGCAAACATT TGCCGAGCTC GGGGTGGTGT TTTTGCTGTT CTCTCTTGGT TTGGAATTCT CTCTACCAAA AATGATCGCT ATGCGCCAAA TGGTGTTTGG GGTGGGCTTA GGACAAATGC TCCTGACTAC TCTTGCGTTT ATGGGGATTA GTATGCTTTT AGGCGTAGAG CTACCAGCTG CCATCATAGT CGGGAGTATC GTCGCGTTAT CGTCTACAGC CATCGTTATT AAGCAAACAA ATGACATGGG GATCCTAAAT ACATCTCGCG CCCAAATGGC GGTCAGTATT CTACTTTTTC AAGATTTGGC CGTTGTGCCT TTACTTATCG TTGTGCCTCT TCTGGCAATG GACGGCGGGC AAAGCTTAAG TATGGCGATT GCGCTTTCTA TCGTGAAGGG CATAGTGGTG GTTTTAATTC TTATGTCCGT GGGTAAATGG ATCCTACCGA GAGTCTTTAC CGAAGTCGCG CAAACTCGCA CGGATGAGTT GTTCGTATTA ACCACCATTT TGGTAGCGTT AATGGCAGCA GGTCTAACGT ATTCTTTTGG GTTGTCGATG GCCCTAGGCG CATTTTTAGC CGGAATGATG TTAGGCGAGA GCCAATATAA ATATCAGTTA GAAGCGGATA TTCGCCCGTT TCGCGATATT TTGATGGGGC TGTTCTTCAT CACAATTGGC ATGCGCCTTA ACCTGACCGA TTTACTGGCT CAATGGCATT GGGCGCTATT GGGGCTGGCC GGTATGTTGT TGATTAAAGT CTTCATTATT CGTCTTGCTG GCGGATTATT CAGTGTACCC AAAGAAGACG CTTGGGCTGC TGGTTTTAAG TTATGCCAGA TGGGGGAGTT CAGTTTCGTC ATCGCCGCTT TAGCGGTTGA TCACAATATT TTATCAACTC AAGTGGGTTC TTTGATCCTC AGTATTGGGA TTTTAAGCAT GGCAATGACC CCTTGGTTAG TGACCCGTAG TTCCGATTTT GCAAAACGTA TGGTGAATGC GCCCCCAGTT GAATTTGAAG CAATCGATTC GGTTGCGGCA AAGCATGAAC TGATGCATGA CCATGTGATT ATCATGGGGT TTGGTCGAGT CGGTCAGTCA GTAGGTCGGT TACTTAAAAG CGAGGCGATC CCTTATTTAG TGGTTGACGC TGATCCCGTG CGCGTGCAAG AGAGCCAAAG TGCTGGACAG CCTGTCTACT TTGGAGATGT TCGGCAAAAC GACATCTTAA AGGCGGTGGG TATAGAGCGT GCTAAGTTAG TATTGATCAC ATTTGATGAG CACAACAAAG CCATGGCGGT TATTCAGCTT ATATCTAGTT TATATCCTGA TTTACCGATA GTGGTGCGTA CTCGTAAAGA CTATCGTATG AATGAGCTAT ACAAGGCAGG AGCGAGCCAG GTAGTACCTG AAATTCTCGA AGGGAGCTTA ATGTTGGTTT CCCAAGTCTT GCATTTATCG GGTATCCCTA TGTCGCGTAT ATTGAAGCGC GTGCGTAAAG AGCGAAAGGG ACAATATGGC AATATGCACG GTTTCTTTCC TGGTGAAACC ACCGAATTGA GTTACGAAAA GCAAGATAAG CTAGAGTTTT TACATGCCGT GATCGTTGCG CCTAACGCCT ATGCGGCGGG TAGAGCATTG GTTGATCTCA ATGTAAATCG TTCCGGAGTC AAAATTAAAG GCCTACGCAG GGACAATATT GAAATGGAAA GTCCACCGAT GAATATGGTG CTAAGAGCGG GCGATGTGTT GGTGATCAGT GGAAAGCCTA GGCGAGTCGA ACGCGCTGAA CGTTATTTAC TGGAAGGCGA TTGA
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Protein sequence | MHGIFANILL LMAVAVASVW LFKRINLPPI LAYLFCGILA GPDLLALFEH PEDMQTFAEL GVVFLLFSLG LEFSLPKMIA MRQMVFGVGL GQMLLTTLAF MGISMLLGVE LPAAIIVGSI VALSSTAIVI KQTNDMGILN TSRAQMAVSI LLFQDLAVVP LLIVVPLLAM DGGQSLSMAI ALSIVKGIVV VLILMSVGKW ILPRVFTEVA QTRTDELFVL TTILVALMAA GLTYSFGLSM ALGAFLAGMM LGESQYKYQL EADIRPFRDI LMGLFFITIG MRLNLTDLLA QWHWALLGLA GMLLIKVFII RLAGGLFSVP KEDAWAAGFK LCQMGEFSFV IAALAVDHNI LSTQVGSLIL SIGILSMAMT PWLVTRSSDF AKRMVNAPPV EFEAIDSVAA KHELMHDHVI IMGFGRVGQS VGRLLKSEAI PYLVVDADPV RVQESQSAGQ PVYFGDVRQN DILKAVGIER AKLVLITFDE HNKAMAVIQL ISSLYPDLPI VVRTRKDYRM NELYKAGASQ VVPEILEGSL MLVSQVLHLS GIPMSRILKR VRKERKGQYG NMHGFFPGET TELSYEKQDK LEFLHAVIVA PNAYAAGRAL VDLNVNRSGV KIKGLRRDNI EMESPPMNMV LRAGDVLVIS GKPRRVERAE RYLLEGD
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