Gene Patl_1270 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1270 
Symbol 
ID4173281 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp1523214 
End bp1525187 
Gene Length1974 bp 
Protein Length657 aa 
Translation table11 
GC content46% 
IMG OID638054277 
Productsodium/hydrogen exchanger 
Protein accessionYP_660850 
Protein GI109897595 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0475] Kef-type K+ transport systems, membrane components
[COG0569] K+ transport systems, NAD-binding component 
TIGRFAM ID[TIGR00932] transporter, monovalent cation:proton antiporter-2 (CPA2) family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCATGGGA TTTTTGCAAA TATTTTACTC TTGATGGCGG TGGCGGTTGC CAGTGTCTGG 
TTATTTAAAC GCATAAATTT GCCGCCTATT TTGGCGTACC TCTTTTGCGG GATCCTCGCA
GGCCCTGATT TACTTGCTTT ATTTGAACAC CCTGAAGATA TGCAAACATT TGCCGAGCTC
GGGGTGGTGT TTTTGCTGTT CTCTCTTGGT TTGGAATTCT CTCTACCAAA AATGATCGCT
ATGCGCCAAA TGGTGTTTGG GGTGGGCTTA GGACAAATGC TCCTGACTAC TCTTGCGTTT
ATGGGGATTA GTATGCTTTT AGGCGTAGAG CTACCAGCTG CCATCATAGT CGGGAGTATC
GTCGCGTTAT CGTCTACAGC CATCGTTATT AAGCAAACAA ATGACATGGG GATCCTAAAT
ACATCTCGCG CCCAAATGGC GGTCAGTATT CTACTTTTTC AAGATTTGGC CGTTGTGCCT
TTACTTATCG TTGTGCCTCT TCTGGCAATG GACGGCGGGC AAAGCTTAAG TATGGCGATT
GCGCTTTCTA TCGTGAAGGG CATAGTGGTG GTTTTAATTC TTATGTCCGT GGGTAAATGG
ATCCTACCGA GAGTCTTTAC CGAAGTCGCG CAAACTCGCA CGGATGAGTT GTTCGTATTA
ACCACCATTT TGGTAGCGTT AATGGCAGCA GGTCTAACGT ATTCTTTTGG GTTGTCGATG
GCCCTAGGCG CATTTTTAGC CGGAATGATG TTAGGCGAGA GCCAATATAA ATATCAGTTA
GAAGCGGATA TTCGCCCGTT TCGCGATATT TTGATGGGGC TGTTCTTCAT CACAATTGGC
ATGCGCCTTA ACCTGACCGA TTTACTGGCT CAATGGCATT GGGCGCTATT GGGGCTGGCC
GGTATGTTGT TGATTAAAGT CTTCATTATT CGTCTTGCTG GCGGATTATT CAGTGTACCC
AAAGAAGACG CTTGGGCTGC TGGTTTTAAG TTATGCCAGA TGGGGGAGTT CAGTTTCGTC
ATCGCCGCTT TAGCGGTTGA TCACAATATT TTATCAACTC AAGTGGGTTC TTTGATCCTC
AGTATTGGGA TTTTAAGCAT GGCAATGACC CCTTGGTTAG TGACCCGTAG TTCCGATTTT
GCAAAACGTA TGGTGAATGC GCCCCCAGTT GAATTTGAAG CAATCGATTC GGTTGCGGCA
AAGCATGAAC TGATGCATGA CCATGTGATT ATCATGGGGT TTGGTCGAGT CGGTCAGTCA
GTAGGTCGGT TACTTAAAAG CGAGGCGATC CCTTATTTAG TGGTTGACGC TGATCCCGTG
CGCGTGCAAG AGAGCCAAAG TGCTGGACAG CCTGTCTACT TTGGAGATGT TCGGCAAAAC
GACATCTTAA AGGCGGTGGG TATAGAGCGT GCTAAGTTAG TATTGATCAC ATTTGATGAG
CACAACAAAG CCATGGCGGT TATTCAGCTT ATATCTAGTT TATATCCTGA TTTACCGATA
GTGGTGCGTA CTCGTAAAGA CTATCGTATG AATGAGCTAT ACAAGGCAGG AGCGAGCCAG
GTAGTACCTG AAATTCTCGA AGGGAGCTTA ATGTTGGTTT CCCAAGTCTT GCATTTATCG
GGTATCCCTA TGTCGCGTAT ATTGAAGCGC GTGCGTAAAG AGCGAAAGGG ACAATATGGC
AATATGCACG GTTTCTTTCC TGGTGAAACC ACCGAATTGA GTTACGAAAA GCAAGATAAG
CTAGAGTTTT TACATGCCGT GATCGTTGCG CCTAACGCCT ATGCGGCGGG TAGAGCATTG
GTTGATCTCA ATGTAAATCG TTCCGGAGTC AAAATTAAAG GCCTACGCAG GGACAATATT
GAAATGGAAA GTCCACCGAT GAATATGGTG CTAAGAGCGG GCGATGTGTT GGTGATCAGT
GGAAAGCCTA GGCGAGTCGA ACGCGCTGAA CGTTATTTAC TGGAAGGCGA TTGA
 
Protein sequence
MHGIFANILL LMAVAVASVW LFKRINLPPI LAYLFCGILA GPDLLALFEH PEDMQTFAEL 
GVVFLLFSLG LEFSLPKMIA MRQMVFGVGL GQMLLTTLAF MGISMLLGVE LPAAIIVGSI
VALSSTAIVI KQTNDMGILN TSRAQMAVSI LLFQDLAVVP LLIVVPLLAM DGGQSLSMAI
ALSIVKGIVV VLILMSVGKW ILPRVFTEVA QTRTDELFVL TTILVALMAA GLTYSFGLSM
ALGAFLAGMM LGESQYKYQL EADIRPFRDI LMGLFFITIG MRLNLTDLLA QWHWALLGLA
GMLLIKVFII RLAGGLFSVP KEDAWAAGFK LCQMGEFSFV IAALAVDHNI LSTQVGSLIL
SIGILSMAMT PWLVTRSSDF AKRMVNAPPV EFEAIDSVAA KHELMHDHVI IMGFGRVGQS
VGRLLKSEAI PYLVVDADPV RVQESQSAGQ PVYFGDVRQN DILKAVGIER AKLVLITFDE
HNKAMAVIQL ISSLYPDLPI VVRTRKDYRM NELYKAGASQ VVPEILEGSL MLVSQVLHLS
GIPMSRILKR VRKERKGQYG NMHGFFPGET TELSYEKQDK LEFLHAVIVA PNAYAAGRAL
VDLNVNRSGV KIKGLRRDNI EMESPPMNMV LRAGDVLVIS GKPRRVERAE RYLLEGD