Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1256 |
Symbol | |
ID | 4173267 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 1504688 |
End bp | 1506040 |
Gene Length | 1353 bp |
Protein Length | 450 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638054263 |
Product | putative membrane-associated zinc metalloprotease |
Protein accession | YP_660836 |
Protein GI | 109897581 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000401781 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTAGGCT TTTTATGGAG TTTAGCGTCG TTCGTTATTG CGCTGGGTAT TTTGGTCGCT GTGCACGAGT GGGGACACTT CTGGGTGGCA AGGCGCTGCG GAGTCAAAGT CGAGCGTTTT TCCGTCGGTT TCGGTAAAGC GCTTTGGCGT CGCACGGATA AGCTAGGCAC TGAATACGTT ATTGCTGCCA TACCATTAGG TGGTTACGTA AAAATGCTCG ACGAGCGAGT AGACGACGTA GCAGAAGAAG ATTTGCCTCA CGCTTTTAAT CGTCAGCACG TACTCAAGCG AATTGCTATT ATCGCTGCTG GCCCGTTAAC CAACTTCATT TTCGCCATAT TTGCTTTATT TGTGATGTAT CTTATCGGCG TTCAAACTAT CAAGCCGATG CTAGGCGAAA TAAAGCCAGA CAGTATCGCC AGCCAAGCTG GATTGCTAGA GGGCTCTATC ATCAAGCGAG TGGGAGAGCG AGACACCATC GATTGGCAAG CGGTGAATCT AGAGCTGATT TCATATATTG GCAATGATAC TCTGCCACTC ACTATTACAT TGCCAAATAG TCCAGTTGAA CAAACTAAAG TGTTAAATTT GAGCACTTGG CAATTTGATC CGGACAAAGA CTCCGCAATC GAAAGTTTAG GTTTGTCTGT GTATCGGCCA GAAGTCTTGA GTATCGTTGG TTTGGTGGCT GAAAAGTCTG CTGCTGAGCA ACTTGGTTTA AAGGTTGGCG ATAAAATTCA GCAGGTAGAT GGAACTACCA TGGCAAATTG GGAACAAATA GTCAGTTATG TTGCAAAGCG TCCCAATGCT GATGTTGTTA TTGAGGTGCT AAGAGACGAG CAGGTTGTGA GGTTGAGCGG CTTGTTGGGC TCGCGCCAAG ATGGTGAAAA TGAGATTGGT TACTTGGGTG TCAGCCCAAC GTTAGCACCA TGGCCGAAAG GGGTTTTATT CACTCACCAA TACGGTCTGA TTGATGCTGT TGCCCAAGCG AGCGACAAAA CATGGCGTCT GATGACGCTT AGCGTCGAAA TGCTAGGAAA GTTAATTACA GGTGATGTGT CGGTTAAAAA CCTCAGTGGA CCGATTTCCA TTGCCCAGGG TGCTGGGATG AGTGCGAGTT CAGGAATAGT GTATTTTCTG AGCTTTTTAG CGTTAATTAG CGTCAATTTG GGAATTATTA ACCTTTTACC CATTCCGGTG CTTGATGGTG GACACTTACT CTATTACTTT ATAGAGCTTT TACGTGGTCG ACCCGTTCCG GACTCTATAC AAGAGATTGG TTTTAAAATA GGTGGCTTAT TATTACTCCT GTTTATGAGT ATCGCCATCA TTAACGACAT TACGCGTTTA TAA
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Protein sequence | MLGFLWSLAS FVIALGILVA VHEWGHFWVA RRCGVKVERF SVGFGKALWR RTDKLGTEYV IAAIPLGGYV KMLDERVDDV AEEDLPHAFN RQHVLKRIAI IAAGPLTNFI FAIFALFVMY LIGVQTIKPM LGEIKPDSIA SQAGLLEGSI IKRVGERDTI DWQAVNLELI SYIGNDTLPL TITLPNSPVE QTKVLNLSTW QFDPDKDSAI ESLGLSVYRP EVLSIVGLVA EKSAAEQLGL KVGDKIQQVD GTTMANWEQI VSYVAKRPNA DVVIEVLRDE QVVRLSGLLG SRQDGENEIG YLGVSPTLAP WPKGVLFTHQ YGLIDAVAQA SDKTWRLMTL SVEMLGKLIT GDVSVKNLSG PISIAQGAGM SASSGIVYFL SFLALISVNL GIINLLPIPV LDGGHLLYYF IELLRGRPVP DSIQEIGFKI GGLLLLLFMS IAIINDITRL
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