| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1195 |
|---|
| Symbol | |
|---|
| ID | 4172601 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 1441469 |
|---|
| End bp | 1442536 |
|---|
| Gene Length | 1068 bp |
|---|
| Protein Length | 355 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638054202 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_660775 |
|---|
| Protein GI | 109897520 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG5653] Protein involved in cellulose biosynthesis (CelD) |
|---|
| TIGRFAM ID | [TIGR03019] FemAB-related protein, PEP-CTERM system-associated |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGGTGC AAGTACGCTT AGTCACACAA GCAGACAAAT CCATATGGAA TGCTTACATC
AATAACCACC CTAGAGCAAC GCCATATCAC TATTATGGTT GGGTCGAAAG TGTAGAACAG
GCATACCAAC ACGAAAATAC CTCAGCCATT GCCCTTTGCG GCGACGACGT TGTTGGCGTG
TTCCCTTGTA TCCTGATGCG TCGACCTTTG TTGCGCCCTG CATTTTGCTC CCTGCCCTAT
TGTGATTTGG GTTTCTTGCT CGCTGATGAC AGCACAACTG CAGATAAACT GATGGCATTC
ATGAAGCAGC AATTATTGAA TGTCACTGGG CGAACATTTC AATTAAGAGA CTACATAGAC
GAACCCCCAC CAGAGTCACA AATGGAAGGC CAAAAAGTAC GCATGCTTTT GTCGTTGCCC
GCCACTAGTG AAGAATTAAT GAGCAACTTC AAATCAAAAC TACGCAGCCA AATACGAAAG
TCAGAAAAAA ATGGCCTGCG CTATGAAATC CATAAAAACG GTAATGGCTT GGACGATTTT
TACCACATAT TCGCGATCAA TATGCGTAAA TTGGGCTCCC CTGTACATAG CAAAGCATGG
TTTCAACATA TCATTGAAAA CTATAAAGAA AACAGTATAT TATCCGTCGT TTACAGTGAA
AACGTACCCG TTGGTGCTGG GATAACGCTG TCTACAGGGG GAGTGACTTC AATACCATGG
GCATCGACAG TCGCCGAGTA CAATCGTTTA GCTCCTAACA TGCTGTTGTA TTGGTCTTTA
CTAAAAGAAG CGTGTGACAA TAACATGCAA ACATTTGATT TTGGGCGCTC CACTTTTAAT
GAGGGGACTT ATCGATTTAA AGCTCAGTGG GGAGCCACGC CCCAATTACT GAATTGGTAT
GATGCCACAA CACAAATTCA ACAAGATTTT AGCGCTCAGG ATAACGATGA ACGTGAAAAC
GTACCACAGG GTAAAATCAG ACCCGTAATT GAGAAAGTTT GGGCAAAATT GCCTTTGCAT
GTAACGACCG CGCTTGGTCC TAAAATTCGT AAACATATCA GTTTGTAA
|
|---|
| Protein sequence | MTVQVRLVTQ ADKSIWNAYI NNHPRATPYH YYGWVESVEQ AYQHENTSAI ALCGDDVVGV
FPCILMRRPL LRPAFCSLPY CDLGFLLADD STTADKLMAF MKQQLLNVTG RTFQLRDYID
EPPPESQMEG QKVRMLLSLP ATSEELMSNF KSKLRSQIRK SEKNGLRYEI HKNGNGLDDF
YHIFAINMRK LGSPVHSKAW FQHIIENYKE NSILSVVYSE NVPVGAGITL STGGVTSIPW
ASTVAEYNRL APNMLLYWSL LKEACDNNMQ TFDFGRSTFN EGTYRFKAQW GATPQLLNWY
DATTQIQQDF SAQDNDEREN VPQGKIRPVI EKVWAKLPLH VTTALGPKIR KHISL
|
|---|
| |