| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1142 |
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| Symbol | |
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| ID | 4173192 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1380640 |
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| End bp | 1382775 |
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| Gene Length | 2136 bp |
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| Protein Length | 711 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638054148 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_660722 |
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| Protein GI | 109897467 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.634377 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTCGTA ATGCAGCTTC ACTTGGTTGT TTTTTATCCG GTATCACCGC TTTAGGATTA
AGCTCTGGTG TTTTAGCTCA GCAACCCAGC GATGACATTG AGCATTTAGA AGTGACTGGG
CGAGCACAGC AGTTTTATTT AGACACCCGC ACGAAGTTAG GCACTAAGAC TGATGCCGAT
TTACTTGATA TACCCATGTC AGCGCAAGTG CTTACCGCTC AGCTGATTTC TGACCAAGCG
GCGCGAGATA TCACCGATTT ATATCGCTCT ATCGCTGGGG TCAGTGAATA CAGTTATTCA
GGGGTGACAT TTCGCGGTTT TCGCGATGAT GGCAATGTTT TTTATGATGG TGTAAGAGGT
GATCCTTATT CAGGATTCAG CGTGCCTGAT TTATTTAATG TTGATCGGGT TGAGGTGCTA
AAAGGCCCAG CTGCTGCACT GTATGGTGGT GGCGAGCCCG GTGGCATGAT CAACTATGTG
ACCAAAAAGC CAACCTTCAA TGAAAGCGCA GAAATTAATC TGACGTTAGG TAACTTCGAC
TTGCACGGTA TTTCAGGGGA AGCGACGGGA GCATTAACCG ACACCACAGC ATATCGTTTG
GGCGGCTTTT ATGAAGCCCA AGATAGCTTT CGTAACAATG CTGATATGGA AAACATCGAA
CTTGCTGGGG GGCTATTACA TGATTTCAGT GACGATACCC GATTAACCAC CACTTTTGAT
TACATAGTGC AGAATCTTGG TGGGCACAGA CTGCGAGGCG TGCCGGTGGA CGATAACGGT
AATTTTTTGG TTGATCGCAC CTACAACGCC AATGAAAAAA GTGATTACCA AGATCTTGAA
GCTTGGGTTG TGCAGTCTGA ACTTGAGCAC GTATTTAGTG ATGCGTTTAG CGTGAATTCA
ACCTTACGCT TGATGACTAA TGAGCGTGAT CAGGCCTATC ACGAATCGCG CAGTTGGGTT
GATGTTAACG GCGACAGTGA AGCAAACATT GATGATGAAA CCATTCGCCG AGAATATCGG
GATCAATACA GAGCCAATGA TGAAATTAGC TTAACCACTG ATTTTGTTTA TGATTTTAGT
GTTGCTGGCA TGCAGCACCA ATTATTGTTT GGTGGTGATT GGCATTACAT AGACACTGAT
TACGAGTATC TGCGCGCCCG CTACGAAGCC GATGGCGTGG GTAACCTGAA TATATTCAAC
CTTAATTATG GTGAAACCGA CCCGGATAGC TACAACCTGA CGGATCAAAA TCGCGATGGC
ATCAGGCGTA ATCGCCAAGG CTTGTACGTG CAAGACATGC TGCAACTGGG CGACAAGTGG
ACGCTGATGT TAGGGGCGCG GTTTGATCAC TTTGAAGAGC GTGATAAACA AAGCGCCTTT
GAGTATGGCG ATCAAGATGT TTCTTATCGT GCTGGGATTA GCTTTAAACC ACTTGAAGAT
ATGTCATTTT ATGCGAATTA CTCTGAAAGT TTTAATCCTG TAGATGCCAC AGACCAAGCT
GATGCGAGTG TGACAGATCT TGAGCCTGTT ACTGGGGACT CAATTGAAGT CGGTGTGAAA
AATGAATGGT TAGGCGGTAG CATTCTGACC ACCTTGGCGG TGTATCACAT CAACAAAGAG
AATTTGATCG CCAGTAACCC TAATTTTATT GAAGGCGAGA ATGAGGACAC TGAATCAGCC
TTGATAAACT TTGGCAACGT GGAAAGTGAC GGCGCTGAGT TTACGCTTGT GGGGGATATT
ACGGATGAGC TGAGCATCAC TGCCAACTAT GCATACAATG ACACCATAGT GGTTGACGGC
AGTTCAAGCA ACACCTTTGG GGCAGGGGAT CGCTTTGTAA ATGCGCCGCG ACAGCAAGCT
GGTTTATGGG GGCGTTACGC TATACATAGC ATCAATTCGT CAATTGCATT GGGCGTTAAT
TACGTCAGTG AGCAAATCAG CTCTGACGCC CAAAAGGTCA AGGCATTTAC TGTATTTGAC
GCGAGTTGGA CTACCAAGTG GGACAATATA CTCCTTAGCG TAAACGTGAA TAATTTGTTT
GATAAAGAAT ATGCCGTGAG CGGTTTCAGC GAACGTAATG GCCATTTCCC AGGGCAACCT
AGAGAAGTGA TTGCTCAGTT GAAATACAGT TTTTAA
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| Protein sequence | MARNAASLGC FLSGITALGL SSGVLAQQPS DDIEHLEVTG RAQQFYLDTR TKLGTKTDAD
LLDIPMSAQV LTAQLISDQA ARDITDLYRS IAGVSEYSYS GVTFRGFRDD GNVFYDGVRG
DPYSGFSVPD LFNVDRVEVL KGPAAALYGG GEPGGMINYV TKKPTFNESA EINLTLGNFD
LHGISGEATG ALTDTTAYRL GGFYEAQDSF RNNADMENIE LAGGLLHDFS DDTRLTTTFD
YIVQNLGGHR LRGVPVDDNG NFLVDRTYNA NEKSDYQDLE AWVVQSELEH VFSDAFSVNS
TLRLMTNERD QAYHESRSWV DVNGDSEANI DDETIRREYR DQYRANDEIS LTTDFVYDFS
VAGMQHQLLF GGDWHYIDTD YEYLRARYEA DGVGNLNIFN LNYGETDPDS YNLTDQNRDG
IRRNRQGLYV QDMLQLGDKW TLMLGARFDH FEERDKQSAF EYGDQDVSYR AGISFKPLED
MSFYANYSES FNPVDATDQA DASVTDLEPV TGDSIEVGVK NEWLGGSILT TLAVYHINKE
NLIASNPNFI EGENEDTESA LINFGNVESD GAEFTLVGDI TDELSITANY AYNDTIVVDG
SSSNTFGAGD RFVNAPRQQA GLWGRYAIHS INSSIALGVN YVSEQISSDA QKVKAFTVFD
ASWTTKWDNI LLSVNVNNLF DKEYAVSGFS ERNGHFPGQP REVIAQLKYS F
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