Gene Patl_1129 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1129 
Symbol 
ID4172304 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp1367374 
End bp1368270 
Gene Length897 bp 
Protein Length298 aa 
Translation table11 
GC content47% 
IMG OID638054135 
ProductLysR family transcriptional regulator 
Protein accessionYP_660709 
Protein GI109897454 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACACAC TAGAAGGTAT GCGTACTTTT ATTGCAGTGG CACGGCAAAA ATCGTTTACA 
AGTGGCGCAA AACAGCTGGG TATTAGCACA AAATTGGCAA GCAAATATAT TGGCCAGTTG
GAAAAAAAAC ACGATGCCTT GTTGTTTCAT CGTACTACTC GTAGTGTCAC ATTGACTGAG
ACCGGGCGGG CTTATTTCGA GCGATGTGTG CCCCTGTTGG AGCAATTTGA TGAATTAGAA
GATGTGATCC AACATCGTCA ATCTGCACTT TCAGGTACTA TAAGACTAAC GGCACCCACC
GCGTTTGGTA GCACTAAGTT GGTGGACGCC CTAGCGCCAT TTTTAAAACA ACACCCTGAT
ATCAGCGTAG AGCTTAGTTT GTCAGATCAG CGGGTGGCCA TTATCGATGA AGGGGTAGAC
GTGGCAATTC GCTTTGGCGA TCTACAGGAC TCGACTCTTA TTGCCAAAAA GTTGATGAAT
ATGCGCGTTG TGGTATTTGC TTCCCCCGAG TATTTAGCGC AAAAAGGTGC ACCAAGTCAT
CCGAATGCCT TAGCCACTCA TCACTGCTTA TTGCAAAAGT CACAAGTGGA TCCGCTAAAT
TGGAAATTCA AAGAAAATGG CCTGACGTTT AATGTGAATG TGCATGGGGT GTTTGCGTCA
AACTCTCCTC GGGCTGTTAC GCAGATGGCG GCGCAGGGGC TGGGCATAGG CATGGGGCCA
ATTTATGTCA CTGAACCTTA CGTAAAAGAG GGGAGCTTGC AGATATTGTT TGAGGAATTC
GAAGCGAACC AACTGACGTT GAGTGCGGTG TATGCATCAA ACCGGCATCT GCCGGCACGC
ATTAGAGCAT TGCTTGATCA TTTAGCGAGC ATGTTTAGCC AACAGCAGTG CTTTTGA
 
Protein sequence
MDTLEGMRTF IAVARQKSFT SGAKQLGIST KLASKYIGQL EKKHDALLFH RTTRSVTLTE 
TGRAYFERCV PLLEQFDELE DVIQHRQSAL SGTIRLTAPT AFGSTKLVDA LAPFLKQHPD
ISVELSLSDQ RVAIIDEGVD VAIRFGDLQD STLIAKKLMN MRVVVFASPE YLAQKGAPSH
PNALATHHCL LQKSQVDPLN WKFKENGLTF NVNVHGVFAS NSPRAVTQMA AQGLGIGMGP
IYVTEPYVKE GSLQILFEEF EANQLTLSAV YASNRHLPAR IRALLDHLAS MFSQQQCF