Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1129 |
Symbol | |
ID | 4172304 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 1367374 |
End bp | 1368270 |
Gene Length | 897 bp |
Protein Length | 298 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638054135 |
Product | LysR family transcriptional regulator |
Protein accession | YP_660709 |
Protein GI | 109897454 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACACAC TAGAAGGTAT GCGTACTTTT ATTGCAGTGG CACGGCAAAA ATCGTTTACA AGTGGCGCAA AACAGCTGGG TATTAGCACA AAATTGGCAA GCAAATATAT TGGCCAGTTG GAAAAAAAAC ACGATGCCTT GTTGTTTCAT CGTACTACTC GTAGTGTCAC ATTGACTGAG ACCGGGCGGG CTTATTTCGA GCGATGTGTG CCCCTGTTGG AGCAATTTGA TGAATTAGAA GATGTGATCC AACATCGTCA ATCTGCACTT TCAGGTACTA TAAGACTAAC GGCACCCACC GCGTTTGGTA GCACTAAGTT GGTGGACGCC CTAGCGCCAT TTTTAAAACA ACACCCTGAT ATCAGCGTAG AGCTTAGTTT GTCAGATCAG CGGGTGGCCA TTATCGATGA AGGGGTAGAC GTGGCAATTC GCTTTGGCGA TCTACAGGAC TCGACTCTTA TTGCCAAAAA GTTGATGAAT ATGCGCGTTG TGGTATTTGC TTCCCCCGAG TATTTAGCGC AAAAAGGTGC ACCAAGTCAT CCGAATGCCT TAGCCACTCA TCACTGCTTA TTGCAAAAGT CACAAGTGGA TCCGCTAAAT TGGAAATTCA AAGAAAATGG CCTGACGTTT AATGTGAATG TGCATGGGGT GTTTGCGTCA AACTCTCCTC GGGCTGTTAC GCAGATGGCG GCGCAGGGGC TGGGCATAGG CATGGGGCCA ATTTATGTCA CTGAACCTTA CGTAAAAGAG GGGAGCTTGC AGATATTGTT TGAGGAATTC GAAGCGAACC AACTGACGTT GAGTGCGGTG TATGCATCAA ACCGGCATCT GCCGGCACGC ATTAGAGCAT TGCTTGATCA TTTAGCGAGC ATGTTTAGCC AACAGCAGTG CTTTTGA
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Protein sequence | MDTLEGMRTF IAVARQKSFT SGAKQLGIST KLASKYIGQL EKKHDALLFH RTTRSVTLTE TGRAYFERCV PLLEQFDELE DVIQHRQSAL SGTIRLTAPT AFGSTKLVDA LAPFLKQHPD ISVELSLSDQ RVAIIDEGVD VAIRFGDLQD STLIAKKLMN MRVVVFASPE YLAQKGAPSH PNALATHHCL LQKSQVDPLN WKFKENGLTF NVNVHGVFAS NSPRAVTQMA AQGLGIGMGP IYVTEPYVKE GSLQILFEEF EANQLTLSAV YASNRHLPAR IRALLDHLAS MFSQQQCF
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