Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1039 |
Symbol | |
ID | 4172825 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 1243637 |
End bp | 1245403 |
Gene Length | 1767 bp |
Protein Length | 588 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638054045 |
Product | DNA primase |
Protein accession | YP_660619 |
Protein GI | 109897364 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0358] DNA primase (bacterial type) |
TIGRFAM ID | [TIGR01391] DNA primase, catalytic core |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00521157 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACGGCC GTATACCTCG TGAATTTATT GATGATTTAA TCGCTCGCAC CGATATTGTT GAGGTGGTAG ACAATCGCGT TAAGCTCAAA AAAGCAGGTA GAAACTATCA AGCATGCTGC CCTTTTCATA ATGAAAAAAG CCCCTCATTT ACAGTAAGTC AAGATAAACA GTTTTATCAC TGCTTCGGTT GCGGTGCCCA TGGCAATGTT ATTTCTTTTT TGATGGAATA TGACCGACTT GAATTCCCAG AAGCCATTGA AGAACTAGCG CAATATCACA GTGTTGATGT ACCTAGAGAA AAAAGCTCAA CCCCCGCTCC TACTGCTGAA CAAAAACAGC AAAAGGCAGA TGATTATGAG CTTATGGAAA CCATATCCCG TTATTTTTCT CAGCAACTTA AAGTGCATAG CGATAAAGAC AAGGCTATCG ACTATTTAAA AAAGCGCGGC CTAAGTGGTG AAGTCGTTAA GGCCTTTGGT ATAGGGTATG CCCCAACCGA GTGGGATGCG GTGCTCAGTA CCTTCGGCCG TACGCCAGAG GCCCAACAGC AACTGCTTGA TTTAAAGCTG ATTACTGAGA ATGATAATCG CCGCAGATTT GATTTCTTTC GCGAACGTAT CATGTTCCCT ATTCGCGATA AGCGTGGCCG CATAGTTGGT TTTGGTGGTC GAGTGTTAGG TGATGGTACG CCTAAATACC TTAACTCTCC TGAGACGCGC ATATTCCATA AAGGCAACGA ACTTTATGGT TTCTATCAAG CGAAACAAGC ACATCGCAAC TTGCCGCGAG TCATGATTGT TGAAGGTTAT ATGGATGTGG TGGCCCTCGC CCAATTTGAT ATTAAGTACG CGGTCGCATC TTTAGGCACA GCCACTACCC CTGAACACAT ACAAATGCTA TTTCGCACTA CCAGCGAGGT AGTTTGTTGC TATGACGGCG ATCGAGCTGG GCGAGAAGCA GCTTGGCGTG CATTAGAAAA TGCCTTGGCA TATCTAAAAG ACGGCGTTGA AATGAAATTC CTGTTTTTAC CCGATGGGGA AGACCCAGAT ACTTTGGTGC GCCAAATTGG CAAAGAAGCA TTCGAGCAAA AACTGGTGAG CGACTCTGTA CCTCTGTCTA AATTTTTCTT TGATAATTTA CTACAGCGTC ACCATATAGG TAGTGCAGAA GGTAAAGCGG CGTTAAAAGC AGAAGCCATG CCGCTAATCG AGCAAATATT AGGGGATAAT CAACGGGCTA TTTTAACCTC TGAGCTCAGT ACGCACATGG GTGATAGAAA TCGCCACCGC CTAGAGCAAG ACGTAGCCAA AGCGAATCAG CATAAAGCAG GCGCAAAACT GGACTTTACC GCTTTAAATA AAGCCAAGAT TTCCCCTATA AGGATGATGA TCCGCTTATT ACTTGACCAG CCAGGGATTG CTATCGAGTG TCAACATGCT AATCCCGCAG CACTGGGCGA TATGCAAGTG CCAGGCCTGG ACTTTTTAAA CGAACTGTTT CAGTTCTGTT TAGGTAAACC CTCTGCCAAT ACCGCCCAAG TATTGGAGCA TTTTAGGGAT CATCCTCAGA GTAAGAATCT CGCTAAATTG CTCGGCTGGG AATACGCTGA AGAAAACCAA GCATTGGTAT TTAAAGATAG TTTTGCCAAG TTACTGGATT GGCATTTTAA AAGTAGGATG GACGAGCTCA TGTCAAAAGC GCGCTTAGGA AATCTCAGTG TAGATGAAAA ACAAGAGCTG AACCTACTTG TAAAAGAACA AAAATGA
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Protein sequence | MNGRIPREFI DDLIARTDIV EVVDNRVKLK KAGRNYQACC PFHNEKSPSF TVSQDKQFYH CFGCGAHGNV ISFLMEYDRL EFPEAIEELA QYHSVDVPRE KSSTPAPTAE QKQQKADDYE LMETISRYFS QQLKVHSDKD KAIDYLKKRG LSGEVVKAFG IGYAPTEWDA VLSTFGRTPE AQQQLLDLKL ITENDNRRRF DFFRERIMFP IRDKRGRIVG FGGRVLGDGT PKYLNSPETR IFHKGNELYG FYQAKQAHRN LPRVMIVEGY MDVVALAQFD IKYAVASLGT ATTPEHIQML FRTTSEVVCC YDGDRAGREA AWRALENALA YLKDGVEMKF LFLPDGEDPD TLVRQIGKEA FEQKLVSDSV PLSKFFFDNL LQRHHIGSAE GKAALKAEAM PLIEQILGDN QRAILTSELS THMGDRNRHR LEQDVAKANQ HKAGAKLDFT ALNKAKISPI RMMIRLLLDQ PGIAIECQHA NPAALGDMQV PGLDFLNELF QFCLGKPSAN TAQVLEHFRD HPQSKNLAKL LGWEYAEENQ ALVFKDSFAK LLDWHFKSRM DELMSKARLG NLSVDEKQEL NLLVKEQK
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