Gene Patl_1039 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1039 
Symbol 
ID4172825 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp1243637 
End bp1245403 
Gene Length1767 bp 
Protein Length588 aa 
Translation table11 
GC content44% 
IMG OID638054045 
ProductDNA primase 
Protein accessionYP_660619 
Protein GI109897364 
COG category[L] Replication, recombination and repair 
COG ID[COG0358] DNA primase (bacterial type) 
TIGRFAM ID[TIGR01391] DNA primase, catalytic core 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00521157 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGGCC GTATACCTCG TGAATTTATT GATGATTTAA TCGCTCGCAC CGATATTGTT 
GAGGTGGTAG ACAATCGCGT TAAGCTCAAA AAAGCAGGTA GAAACTATCA AGCATGCTGC
CCTTTTCATA ATGAAAAAAG CCCCTCATTT ACAGTAAGTC AAGATAAACA GTTTTATCAC
TGCTTCGGTT GCGGTGCCCA TGGCAATGTT ATTTCTTTTT TGATGGAATA TGACCGACTT
GAATTCCCAG AAGCCATTGA AGAACTAGCG CAATATCACA GTGTTGATGT ACCTAGAGAA
AAAAGCTCAA CCCCCGCTCC TACTGCTGAA CAAAAACAGC AAAAGGCAGA TGATTATGAG
CTTATGGAAA CCATATCCCG TTATTTTTCT CAGCAACTTA AAGTGCATAG CGATAAAGAC
AAGGCTATCG ACTATTTAAA AAAGCGCGGC CTAAGTGGTG AAGTCGTTAA GGCCTTTGGT
ATAGGGTATG CCCCAACCGA GTGGGATGCG GTGCTCAGTA CCTTCGGCCG TACGCCAGAG
GCCCAACAGC AACTGCTTGA TTTAAAGCTG ATTACTGAGA ATGATAATCG CCGCAGATTT
GATTTCTTTC GCGAACGTAT CATGTTCCCT ATTCGCGATA AGCGTGGCCG CATAGTTGGT
TTTGGTGGTC GAGTGTTAGG TGATGGTACG CCTAAATACC TTAACTCTCC TGAGACGCGC
ATATTCCATA AAGGCAACGA ACTTTATGGT TTCTATCAAG CGAAACAAGC ACATCGCAAC
TTGCCGCGAG TCATGATTGT TGAAGGTTAT ATGGATGTGG TGGCCCTCGC CCAATTTGAT
ATTAAGTACG CGGTCGCATC TTTAGGCACA GCCACTACCC CTGAACACAT ACAAATGCTA
TTTCGCACTA CCAGCGAGGT AGTTTGTTGC TATGACGGCG ATCGAGCTGG GCGAGAAGCA
GCTTGGCGTG CATTAGAAAA TGCCTTGGCA TATCTAAAAG ACGGCGTTGA AATGAAATTC
CTGTTTTTAC CCGATGGGGA AGACCCAGAT ACTTTGGTGC GCCAAATTGG CAAAGAAGCA
TTCGAGCAAA AACTGGTGAG CGACTCTGTA CCTCTGTCTA AATTTTTCTT TGATAATTTA
CTACAGCGTC ACCATATAGG TAGTGCAGAA GGTAAAGCGG CGTTAAAAGC AGAAGCCATG
CCGCTAATCG AGCAAATATT AGGGGATAAT CAACGGGCTA TTTTAACCTC TGAGCTCAGT
ACGCACATGG GTGATAGAAA TCGCCACCGC CTAGAGCAAG ACGTAGCCAA AGCGAATCAG
CATAAAGCAG GCGCAAAACT GGACTTTACC GCTTTAAATA AAGCCAAGAT TTCCCCTATA
AGGATGATGA TCCGCTTATT ACTTGACCAG CCAGGGATTG CTATCGAGTG TCAACATGCT
AATCCCGCAG CACTGGGCGA TATGCAAGTG CCAGGCCTGG ACTTTTTAAA CGAACTGTTT
CAGTTCTGTT TAGGTAAACC CTCTGCCAAT ACCGCCCAAG TATTGGAGCA TTTTAGGGAT
CATCCTCAGA GTAAGAATCT CGCTAAATTG CTCGGCTGGG AATACGCTGA AGAAAACCAA
GCATTGGTAT TTAAAGATAG TTTTGCCAAG TTACTGGATT GGCATTTTAA AAGTAGGATG
GACGAGCTCA TGTCAAAAGC GCGCTTAGGA AATCTCAGTG TAGATGAAAA ACAAGAGCTG
AACCTACTTG TAAAAGAACA AAAATGA
 
Protein sequence
MNGRIPREFI DDLIARTDIV EVVDNRVKLK KAGRNYQACC PFHNEKSPSF TVSQDKQFYH 
CFGCGAHGNV ISFLMEYDRL EFPEAIEELA QYHSVDVPRE KSSTPAPTAE QKQQKADDYE
LMETISRYFS QQLKVHSDKD KAIDYLKKRG LSGEVVKAFG IGYAPTEWDA VLSTFGRTPE
AQQQLLDLKL ITENDNRRRF DFFRERIMFP IRDKRGRIVG FGGRVLGDGT PKYLNSPETR
IFHKGNELYG FYQAKQAHRN LPRVMIVEGY MDVVALAQFD IKYAVASLGT ATTPEHIQML
FRTTSEVVCC YDGDRAGREA AWRALENALA YLKDGVEMKF LFLPDGEDPD TLVRQIGKEA
FEQKLVSDSV PLSKFFFDNL LQRHHIGSAE GKAALKAEAM PLIEQILGDN QRAILTSELS
THMGDRNRHR LEQDVAKANQ HKAGAKLDFT ALNKAKISPI RMMIRLLLDQ PGIAIECQHA
NPAALGDMQV PGLDFLNELF QFCLGKPSAN TAQVLEHFRD HPQSKNLAKL LGWEYAEENQ
ALVFKDSFAK LLDWHFKSRM DELMSKARLG NLSVDEKQEL NLLVKEQK