| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1038 |
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| Symbol | |
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| ID | 4172824 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1241650 |
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| End bp | 1243491 |
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| Gene Length | 1842 bp |
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| Protein Length | 613 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638054044 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD |
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| Protein accession | YP_660618 |
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| Protein GI | 109897363 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0389354 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTGCAAA GCAAGCAGTC GCAGATAAAA CTCCTCATTG CAAAAGGTAA AGAACAAGGC
TACTTGACCT TTGCCGAAGT AAATGATCAC CTGCCTCAAG ACATAGTTGA CTCGGATCAA
ATCGAAGACA TTATCCGCAT GATCAACGAC ATGGGGATCA AAGTGTTTGA AAACGCTCCT
GATTCCGATG AACTATTGAT GCAAGAAACC ACGACAGATG AAGAAGTCGC GGAAGCCGCC
GCCCAAGCCC TAGCTACGGT AGAAAGCGAG ATTGGTAGAA CAACAGACCC TGTGCGTATG
TACATGCGTG AGATGGGTAC GGTTGAGCTG TTAACTCGTG AAGGCGAAAT TGTTATCGCC
AAGCGCATCG AAGAAGGTAT CAATCAGGTT CAATGTTCTG TTGCAGAATA CCCTGAGGCA
ATCACCTACT TGCTTGATCA GTGGGACATG TTCGAAGCGG AAGAAATTCG CTTAAGTGAC
ATCATTGTTG GTTTCGTTGA TCCTAACGAA GCAGACAATA TTGCCCCTAC CGCTACCCAC
ATTGGTTCTG AGTTATCTGA AGAAGAGTTG GAAGACGAAG ATGATGATGG CGACGATAGC
GATGATGAAG ACGAAGAAGA AGAAGATACA GGCCCAGATC CAGAAGAGGC CCGTGAGAAG
TTCTCTGAAT TACGTGTTCA ATACGAAAAA ACGCGCGATG TAATTGCATC TGAAGGCCGT
TCTCACGCGA AGTCACGCAA AGAAATTGAT GAATTAAGCG AGATTTTCAA AGAGTTCCGC
TTAGTGCCCA AGCAGTTTGA CCGTATGGTT AAAAACATGC GCAGCATGAT GGATCGTATC
CGTGTGCAAG AACGCATCGT GATGAAACAC TGTGTTGCTG CGGCAAAAAT GCCTAAGAAA
GACTTCATCA AAGCGTTCTC TGGAAACGAA ACCAGTACTG ATTGGTTATT CGAAATTCTT
GCTTCTGACG CGCCTTATGT TGAAGAGCTT AAAGTACATC AAGAAGAACT AGAGCGTAGC
ATCGGTAAAA TGAATGCCGT TGAAGACGAA ACCGGCTTGA TCATTGCCGA CATAAAAGAC
ATTAACCGTC GTATGTCAAT TGGTGAAGCG AAAGCGCGCC GTGCGAAGAA AGAAATGGTG
GAAGCTAACT TACGATTGGT TATCTCAATT GCGAAGAAGT ACACCAACCG TGGTTTACAA
TTCTTGGATC TGATTCAAGA AGGTAATATC GGTTTGATGA AAGCTGTTGA TAAATTCGAA
TACCGTCGTG GTTACAAGTT CTCGACTTAT GCTACGTGGT GGATCCGCCA AGCAATCACA
CGTTCGATTG CAGATCAGGC ACGGACTATT CGTATTCCTG TGCACATGAT TGAAACAATC
AATAAATTGA ACCGTATTTC TCGTCAAATG TTACAAGAGA TGGGCCGCGA ACCAACGCCA
GAAGAATTGT CAGAGCGCAT GTTAATGCCT GAAGACAAAA TCCGTAAGGT GTTGAAAATT
GCTAAAGAGC CCATTTCAAT GGAAACCCCT ATTGGCGATG ATGAAGATTC ACATTTAGGT
GATTTCATTG AAGATAGCAC CATTGTGCAG CCTCTTGACT CTGCCACTGG CGGTAGCTTG
AAGAACGCCA CTCAAGAAGT ATTAGCAGGC CTAACCGCCC GTGAAGCGAA AGTATTGAGA
ATGCGTTTTG GTATCGACAT GAACACGGAC CACACGCTTG AAGAAGTCGG CAAGCAGTTT
GACGTTACTC GTGAGCGTAT TCGTCAAATC GAAGCGAAGG CACTGCGTAA ACTACGTCAT
CCAAGTCGCT CTGAGCAGCT ACGCAGCTTC TTAGACGAAT AA
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| Protein sequence | MVQSKQSQIK LLIAKGKEQG YLTFAEVNDH LPQDIVDSDQ IEDIIRMIND MGIKVFENAP
DSDELLMQET TTDEEVAEAA AQALATVESE IGRTTDPVRM YMREMGTVEL LTREGEIVIA
KRIEEGINQV QCSVAEYPEA ITYLLDQWDM FEAEEIRLSD IIVGFVDPNE ADNIAPTATH
IGSELSEEEL EDEDDDGDDS DDEDEEEEDT GPDPEEAREK FSELRVQYEK TRDVIASEGR
SHAKSRKEID ELSEIFKEFR LVPKQFDRMV KNMRSMMDRI RVQERIVMKH CVAAAKMPKK
DFIKAFSGNE TSTDWLFEIL ASDAPYVEEL KVHQEELERS IGKMNAVEDE TGLIIADIKD
INRRMSIGEA KARRAKKEMV EANLRLVISI AKKYTNRGLQ FLDLIQEGNI GLMKAVDKFE
YRRGYKFSTY ATWWIRQAIT RSIADQARTI RIPVHMIETI NKLNRISRQM LQEMGREPTP
EELSERMLMP EDKIRKVLKI AKEPISMETP IGDDEDSHLG DFIEDSTIVQ PLDSATGGSL
KNATQEVLAG LTAREAKVLR MRFGIDMNTD HTLEEVGKQF DVTRERIRQI EAKALRKLRH
PSRSEQLRSF LDE
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