| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1037 |
|---|
| Symbol | |
|---|
| ID | 4172823 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 1238260 |
|---|
| End bp | 1241370 |
|---|
| Gene Length | 3111 bp |
|---|
| Protein Length | 1036 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638054043 |
|---|
| Product | acriflavin resistance protein |
|---|
| Protein accession | YP_660617 |
|---|
| Protein GI | 109897362 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGTTAT CTGATATCTC CATCAAACGC CCAGTATTCG CTTCGGTCGT CAATTTACTT
TTAGTGGTAT TCGGGATTGT TGCTGTGACG TTTCTGTCAT TGCGGGAATA CCCAGATGTT
GACCCTCCCA TTGTATCAAT TAACACAACC TATACCGGCG CATCAGCAGC CATCATCGAA
AGCCGGATCA CCCAATTATT AGAAGACCGT ATCAGTGGTA TAGAAGGGAT TAAAAATATT
GAGTCGACCA GCAGAAATGG ACGGTCCTCA ATCGATGTAG AATTTAACCT TTCCAGAGAC
ATTGACGCCG CTTCAAACGA TGTGCGTGAG CGGGTAAGCC GGGCGCTGAA TAACTTGCCT
GATCAGGCAG ATCCCCCTGA GGTATCAAAA TCAACCTCAG ATGATGACGT CATCGTTTGG
TATAACCTGC GCAGTGACAA CATGAGTGTT ATGGAGCTGA CCGATTACGC CGACCGCTAC
TTGGTAGACC GATTATCTGT AGCCGAGGGG GTGGCGAATG TGCGGTTAGG AGGCGGTCGC
AGTTATGCCA TGAAAGTTTG GCTTAATCGT AATGCTATGG CGGCTAGAGG TATTACCGTT
GCAGACATAG AGCAGGTTAT TCAGGCTGAA AATGTGGAGC TCCCCGCGGG AGAAGTGCAG
TCAGATCAAC GAGATTTTGA TGTGCGTGTT GCGCGTAGTT ATTTAAGCCC GGATGATTTC
TCAAAACTTC CTGTTAAAGC TGGCGCTGAC GGATATCTTA TCCGTTTAGG GGAAGTGGCT
ACGGTTGAGC TAGGCGCAGA AGACGACGAA ACAGAGTTTC GAGGTAATGG CGTGAACATG
ATTGGCTTAG GTATTACTAA GCAATCGAAA GCCAATACAT TAGAAGTAGC AAGAGCGGCA
AAAGAAGCGA TAGATGAAAT TCAGCAGACC TTGCCGGATA ATATTTTTAT TGTACCTAGT
TATGACTCCT CAGTGTTTAT TGAAGCCTCA ATAAACGAAG TATATGAAAC ACTAGCCATT
GCGATGTTGA TGGTGGTGTT AGTCATTTAT ATTTTCCTTG GCAATATCCG TGCGACGATC
ATCCCTGCGG TGACCGTACC TGTGTCGTTA GTCGCCGCGT TCACTGTGAT GTACGCCTTG
GGCTTTTCTA TCAACTTATT AACGCTTCTC GCATTAGTGT TAGCTATCGG GTTGGTGGTG
GATGACGCCA TTGTGGTACT TGAGAATATC TCACGTCGTA TAGAGTTAGG TGAGCCGCCG
TTATTAGCTG CCTATCGTGG AGCGCGTGAG GTCGGGTTTG CTGTTATAGC AACAACACTA
GTGTTGATCG CGGTGTTTGT ACCCTTAGTG TTTTTACAAG GAAATATAGG TCGGCTATTT
ACCGAGTTCG CTTTGGCAAT AGCGGCAGCA GTGGCATTTT CAAGTGTCAC TGCATTAACG
CTGATACCTA TGTTGAGCTC TAAACTATTA ACAAAAACTA AAAGTTCTAA AGGGTTAAAT
GCGTGGATGA ACAGGTCGTT CACCAAGTTT GAAGGCAGCT ACTTCAGGGT GCTTGGCAAA
ACCATTCATC AACCTATTTT GATGGCGTTG CTTATTCTGG TGAGTGTTGT TGGTTTATTA
CGATTGGTGG AAATATTACC TAGTGAATTT GTACCAAAAG AAGACAGAGG CAATTTCTTT
ATACAGATCC AAGCGGCAGA GGGCGCAAGC TTTAAAGAAA ACAGTAGAAG CATGAAAAAG
GTAGAAGAGA TCATTCTGCC GTATTTAGAC AGCGGAGAAG CAACACGGGT TCTCGTTCGA
TTACCGGGCT TTGGCAGTAG TGCAGGCATT GCCATTGTAG GCACCCCAAT AGGGGATGAG
AAAAAACGCT CAACGTTTGA TTTAATGGAT GAAATCAGTC AAAAGTTATC CGTTATCCCT
GATGTGCGAG CGTTCGCAAT CATGCGCTCA AGTTTGGGCG GGCGAGGCGT CGGGCGTCCA
GTACAATTTG TTCTTCAGGG GAATACTTAT GAAGAGCTGG TTGAGTGGCG GGATAAGCTT
CTGTCAATTG CCCGCCAAAA CCCTAACTTG CTGCGGTTGG ACTCAGATTA CAAAGAAACG
TTGCCGCAAC TCTTGATTAA TATCGATACC GAGCGTGCAG CAGATTTAGG GGTATCGGTG
AGCGATATTG GCACCACGTT GGAAACAATG TTAGGCCAGC GCCGTGTGTC GACTTTCCTA
GATCGTGGCC AAGAATACGA TGTGATTTTA GAAGGCCGCC GTGAGGACTA TCGCAGCCCA
CAGAGTATTG ATAACTTGTA CGTGCGCTCA TTTAGGACAG GCGAATTGAT CCCAATGGAT
AACCTATTGA AAGTGGAAGA GCGAGCCACG TCTTCGCGCT TGAATCGCTA CAATCGGATG
CGCAGTATCA CCATCAGTGC AAACTTGGCT GACGGTTACA CGGTGGGCGA AGCACTGGCT
TACCTAAATA ATATTGTTGA TACCGAATTA CCGGAAGGTG TGTCGGTAGA TTACAAGGGA
GAGTCTCAAC TCTATCAGGA GTCGGGTAAC TCCATTATTT TTATCTTTCT AATGGCTTTG
GTCATCGTGT ATCTGATCCT TGCGGCTCAG TTTGAAAGTT GGGTGCATCC GTTAGTTATC
ATGCTCACTG TGCCATTGGC GTTAGTAGGG GCCTTTATCG GACTATATTT TGCGGGAATG
ACGCTGAATA TATACAGCCA AATTGGCTTA GTGATGTTGA TTGGACTTGC GGCCAAAAAC
GGCATTCTGA TTGTAGAATT TGCCAATCAA CTACGTGATG CTGGTGCTGA GTTTGAATCA
GCCCTTAAAC GCGCCGCCAT GCTGCGCCTT AGACCTATCG TGATGACCAG TTTCACTACT
ATCTTTAGCT CATTGCCACT GGTGTTTGCA AGTGGTGCAG GCTCCGAAAG CAGAACCGTT
ATCGGCATGG TGATATTCGC TGGGGTGCTT GTATCAACGC TACTGACCTT GTTTGTGGTT
CCCACTGCCT ACTATTGGTT GGCACGTAAC ACTGGCTCGC CGCTGGCTAT CACTCATAAG
CTAGAAAAAC TCGAAGATGA AATTCCTTAC GTTAAGGGTG ATGATTTTTA A
|
|---|
| Protein sequence | MLLSDISIKR PVFASVVNLL LVVFGIVAVT FLSLREYPDV DPPIVSINTT YTGASAAIIE
SRITQLLEDR ISGIEGIKNI ESTSRNGRSS IDVEFNLSRD IDAASNDVRE RVSRALNNLP
DQADPPEVSK STSDDDVIVW YNLRSDNMSV MELTDYADRY LVDRLSVAEG VANVRLGGGR
SYAMKVWLNR NAMAARGITV ADIEQVIQAE NVELPAGEVQ SDQRDFDVRV ARSYLSPDDF
SKLPVKAGAD GYLIRLGEVA TVELGAEDDE TEFRGNGVNM IGLGITKQSK ANTLEVARAA
KEAIDEIQQT LPDNIFIVPS YDSSVFIEAS INEVYETLAI AMLMVVLVIY IFLGNIRATI
IPAVTVPVSL VAAFTVMYAL GFSINLLTLL ALVLAIGLVV DDAIVVLENI SRRIELGEPP
LLAAYRGARE VGFAVIATTL VLIAVFVPLV FLQGNIGRLF TEFALAIAAA VAFSSVTALT
LIPMLSSKLL TKTKSSKGLN AWMNRSFTKF EGSYFRVLGK TIHQPILMAL LILVSVVGLL
RLVEILPSEF VPKEDRGNFF IQIQAAEGAS FKENSRSMKK VEEIILPYLD SGEATRVLVR
LPGFGSSAGI AIVGTPIGDE KKRSTFDLMD EISQKLSVIP DVRAFAIMRS SLGGRGVGRP
VQFVLQGNTY EELVEWRDKL LSIARQNPNL LRLDSDYKET LPQLLINIDT ERAADLGVSV
SDIGTTLETM LGQRRVSTFL DRGQEYDVIL EGRREDYRSP QSIDNLYVRS FRTGELIPMD
NLLKVEERAT SSRLNRYNRM RSITISANLA DGYTVGEALA YLNNIVDTEL PEGVSVDYKG
ESQLYQESGN SIIFIFLMAL VIVYLILAAQ FESWVHPLVI MLTVPLALVG AFIGLYFAGM
TLNIYSQIGL VMLIGLAAKN GILIVEFANQ LRDAGAEFES ALKRAAMLRL RPIVMTSFTT
IFSSLPLVFA SGAGSESRTV IGMVIFAGVL VSTLLTLFVV PTAYYWLARN TGSPLAITHK
LEKLEDEIPY VKGDDF
|
|---|
| |