Gene Patl_1034 details

Gene Information

• Locus tag: Patl_1034
• ID: 4172820
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 1231418
• End bp: 1231969
• Gene Length: 552 bp
• Protein Length: 183 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 638054040
• Product: PEP motif-containing protein
• Protein accession: YP_660614
• Protein GI: 109897359

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.00980254
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAAAG TACTTTTATT AGTTTGTACA ATGTTTTTTG GCACCGCTAA CGCCAATATG 
ATCAATATCG AGCTGGACAA TGTAAACCCA TCAGTGGGGG ATACGGTGTC TATTAATATC 
AACTTGACTG GTGTTACCGA AGATTTTTCG GCCATCTTCA CTGGCCTGAA TTATGATAGC 
AACCTTTTTG CATATGTAGA TGGTAGTGCC AGCTCTGACT TCCCACCTTT TGATCCGTTT 
ACAGCAAGTG GGCTAGATGT TGACACTACG GGTCCAGGGC TTGTTTCTAT TAACCTTTAC 
GAAGACTTCT TCGCTCCGGT AGTTTATGGC GCTGGCGATT ATCTAGTAGC AAGCTTCGAT 
TTGCTGGCTA TTGGTGCAGG TCAATCTTCA TTCTCTCTAG TTGCTTCATC TCTGTTCGCT 
CCGTTCCCCG GTGATGAAAC GGCTTTGGAT GTTAGTGCAT CTGCAACTAG CATAGCCGTA 
CCGGCACCTG GTGCGATGGC CTTTATGGGC TTAGCGGTTC TAGGCTTGTT TGGTGTTCGC 
CGTAAAGCGT AA 

 

Protein sequence

MKKVLLLVCT MFFGTANANM INIELDNVNP SVGDTVSINI NLTGVTEDFS AIFTGLNYDS 
NLFAYVDGSA SSDFPPFDPF TASGLDVDTT GPGLVSINLY EDFFAPVVYG AGDYLVASFD 
LLAIGAGQSS FSLVASSLFA PFPGDETALD VSASATSIAV PAPGAMAFMG LAVLGLFGVR 
RKA