| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1028 |
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| Symbol | |
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| ID | 4173307 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1221657 |
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| End bp | 1223063 |
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| Gene Length | 1407 bp |
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| Protein Length | 468 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638054034 |
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| Product | nitrogen metabolism transcriptional regulator, NtrC, Fis family |
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| Protein accession | YP_660608 |
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| Protein GI | 109897353 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR01818] nitrogen regulation protein NR(I) |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.070914 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACAG AACCAGTTTG GATAGTTGAT GACGATAGTT CTATTCGTTG GGTGTTACAA
AAAGCGCTGC AAGCTGCGAG CATTCCATGT TTCAGCTTTG AGAATCCTGA AGATTTATTG
TTACAGTTGC AGACGGATCA ACCACCAGAA GTGATTGTAT CGGATATTCG TATGCCGCAA
ATGGATGGTA TGGCATTACT TGAAGAAGTG CACAAGCGAT ATCCGAACAT TCCCGTCATC
ATTATGACTG CGCATTCTGA TTTAGACAGC GCGGTAAACG CTTATCAAAG CGGCGCGTTT
GAATATTTGC CAAAACCTTT CGATATTGAT GAAGCAGTAG GCCTAGTGCG CAGAGCACTC
ACTCACGTGC GAGAACAAGC AAAAAGTAAT CAACGTCCGA TTTTAGCGAC CGCGACCGAA
ATCATCGGTG AAGCTCCTGC TATGCAAGAA GTCTTCAGAG CAGTAGGGCG CTTATCTCGC
TCGAGTATCA GTGTGTTGAT TAATGGTCAA TCGGGCACAG GTAAAGAGCT TGTTGCACAA
GCCTTGCATC GCCATAGTCC TAGAGCAAAG CAAACATTTA TCGCCTTAAA TATGGCGGCT
ATACCGGCCG ATTTAATTGA GTCTGAATTG TTCGGCCATG AAAAAGGCGC ATTTACTGGA
GCACAGAATG CCCGGCAAGG ACGATTCGAG CAAGCCGATG GTGGTACCTT GTTTCTCGAT
GAAATAGGTG ACATGCCACT TGATGTGCAA ACTCGATTGT TGCGTGTGTT AGCTGATGGG
CAATTTTATC GCGTGGGCGG TCATAACCCT GTCAGCGTTG ATGTAAGGAT CATTGCGGCC
ACTCACCAAA ACCTCGAGCA GCGCGTAGCG GATGGCAAAT TTAGAGAAGA CTTATTTCAT
CGCTTAAATG TTATTCGTAT TCATATACCG CGCTTAACTG AGCGACGAGA GGATGTACCT
TTACTCGCTG CGCACTTCTT ACAAAAAGCA GGAGCGGAGC TAGGGGTAGA AGTCAAAAGT
CTGAGTAAAG AAACTAAAAA GATCTTGATG CAGTTGCCGT GGCCAGGAAA CGTACGTCAG
CTTGAGAACG TATGTCGATG GTTAACAGTG ATGGCAAGTG GGCAAGAAGT CTTGCCCCAT
GATTTGCCGC CAGAGATCCA TGAGCTCCCC TTAAGCAAAG ACAGTCAGGA AGCGTCAGGT
GATTGGCAAA CCTTGCTTGC AACTTGGGCC GATGAACAGC TACAGTCAGG TCGTAATAAT
ATCTTAGATG AAGCGATGCT GGTATTTGAA AGGGTGTTAC TCGAGCGGGC CTTGTTCCAT
ACTCATGGCC ATAAACAAGA TGCGGCAAAA CGACTGGGGT GGGGGCGTAA CACGCTAACG
CGTAAGCTAA AAGAGCTTAA TATGTAG
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| Protein sequence | MSTEPVWIVD DDSSIRWVLQ KALQAASIPC FSFENPEDLL LQLQTDQPPE VIVSDIRMPQ
MDGMALLEEV HKRYPNIPVI IMTAHSDLDS AVNAYQSGAF EYLPKPFDID EAVGLVRRAL
THVREQAKSN QRPILATATE IIGEAPAMQE VFRAVGRLSR SSISVLINGQ SGTGKELVAQ
ALHRHSPRAK QTFIALNMAA IPADLIESEL FGHEKGAFTG AQNARQGRFE QADGGTLFLD
EIGDMPLDVQ TRLLRVLADG QFYRVGGHNP VSVDVRIIAA THQNLEQRVA DGKFREDLFH
RLNVIRIHIP RLTERREDVP LLAAHFLQKA GAELGVEVKS LSKETKKILM QLPWPGNVRQ
LENVCRWLTV MASGQEVLPH DLPPEIHELP LSKDSQEASG DWQTLLATWA DEQLQSGRNN
ILDEAMLVFE RVLLERALFH THGHKQDAAK RLGWGRNTLT RKLKELNM
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