| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1013 |
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| Symbol | rpsD |
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| ID | 4171989 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1198503 |
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| End bp | 1199123 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638054014 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_660593 |
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| Protein GI | 109897338 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000212014 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCAAGAT ATTTGGGTCC AAAACTCAAA CTTAGCCGCC GCGAAGGAAC AGACTTGTTC
CTGAAAAGTG GCGTTCGAGC AATCGAATCA AAATGTAAAA TTGATAACGC ACCTGGTCAA
CACGGCGCAC GTCGTGGACG TTTGTCTGAC TACGGTGTTC AATTACGTGA AAAGCAAAAA
GTTCGTCGTA TGTACGGTGT TCTTGAAAAG CAATTCCGTA ACTACTATAA AGAAGCGGCA
CGCTTAAAAG GCAATACAGG TGAAAACTTG TTGCAACTTT TAGAGCAACG TTTAGACAAT
GTTGTTTACC GCATTGGTTT TGCTAGCACT CGTTCTGAAG CGCGTCAACT AGTTAGCCAC
AAAGCAATTT TGGTTAACGG TCAAGTTGTT AACGTTCCTT CTTTTAATGT TTCTGCTGAT
GATGTTGTAT CTGTACGTGA AAAAGCTAAA AAACAAGCTC GTATTGTTTC TGCTTTAGAG
CTTGCTGAGC AACGTGAGAA ACCAACTTGG ATTGAAGTGG ACAGCAAAAA GATGGAAGGC
ACATTTAAAC GTGTTCCTGA AAGAACTGAT TTGTCTGCTG AAATAAACGA ACAGTTGATT
GTCGAACTTT ACTCTAAGTA A
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| Protein sequence | MARYLGPKLK LSRREGTDLF LKSGVRAIES KCKIDNAPGQ HGARRGRLSD YGVQLREKQK
VRRMYGVLEK QFRNYYKEAA RLKGNTGENL LQLLEQRLDN VVYRIGFAST RSEARQLVSH
KAILVNGQVV NVPSFNVSAD DVVSVREKAK KQARIVSALE LAEQREKPTW IEVDSKKMEG
TFKRVPERTD LSAEINEQLI VELYSK
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