| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1009 |
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| Symbol | secY |
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| ID | 4171985 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1196131 |
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| End bp | 1197450 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638054010 |
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| Product | preprotein translocase subunit SecY |
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| Protein accession | YP_660589 |
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| Protein GI | 109897334 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0201] Preprotein translocase subunit SecY |
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| TIGRFAM ID | [TIGR00967] preprotein translocase, SecY subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00114462 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCTAAAC CAGGATCAAA TTCAAGCGCA AAAGGCGGCT TGAGTGAGCT TAAGTCAAGA
TTGTTGTTCG TACTTGGTGC GATAATTGTG TTTAGGCTTG GCTCATATGT GCCTATTCCT
GGTATCGATG CCGCGGTGTT GGCTGAATTA TTCGACCAGC AAAAGGGTAC CATTGTAGAA
ATGTTTAACA TGTTCTCTGG TGGTGCTCTT GAGCGTGCCT CGGTTCTTGC CCTGGGTATA
ATGCCATACA TTACAGCTTC CATTATCATT CAGTTGCTTA CTGTTATGCA TCCACCGATG
ATGGAACTTA AAAAAGAAGG CGAAGCAGGA CGTCGTAAAA TTAGTCAATA CACACGTTAT
TTCACGTTAG TGTTGGCTAC ATTCCAAGCA ATTGGGATAG CGACAAATCT ACCTAATCTG
ATTTCAGGTT TGGTGATTAA TCCGGGGTTC GGTTTTTACT TCACAGCTGT TGTGAGTTTG
GTCACCGGTA CCATGTTTTT AATGTGGTTA GGTGAGCAAA TTACAGAGAG AGGTATCGGT
AACGGTATTT CTATATTGAT TTTCGCGGGT ATCGTGTCAG GTTTGCCGAC GGCCATAGGT
CAAACGGCAG AGCAAGCACG ACAAGGTGAT TTGAACCTAC TGTTCTTGTT ACTTATTGGC
GTAATAATAA TTGCTATCAC GTATTTTGTT GTGTTCGTAG AGCGTGGCCA ACGTCGTATC
GTCGTTAACT ATGCAAAGCG TCAGCAGGGC CGTAAGGTCT TTGCAGCACA AAGCACGCAT
TTACCGTTAA AAGTAAATAT GGCAGGTGTT ATTCCTCCGA TTTTCGCGTC AAGCATCATT
CTGTTCCCTG GAACCATTGC AAATTGGTTT GGTCAGAATG AGTCATTCTC TTGGTTACAA
GAAGTGGCAT TGATGTTGTC TCCTGGACAG CCTCTGTATG TGATGTTTTA CGCTGCTGCG
ATCATCTTCT TTTGTTTCTT CTATACTGCG TTGGTTTTTA ACCCTCGCGA AACAGCGGAC
AATTTGAAGA AGTCTGGTGC GTTCGTTCCT GGGATTCGTC CTGGTGAGCA GACCTCACGA
TACGTTGATA AGGTAATGAC TCGCTTAACC CTAGCTGGCG CGCTTTATAT AACCTTTATT
TGTTTGGTGC CTGAATTCAT GTTGATAGCT TGGAACGTAC CGTTTTACTT CGGTGGGACC
TCTCTACTTA TTATGGTAGT GGTTATCATG GATTTCATGG CGCAAGTGCA GACCCATTTG
ATGTCTCATC AATATGAGTC TGTTCTTAAG AAAGCTAACC TTAAGGGCTA CGGCCGTTAA
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| Protein sequence | MAKPGSNSSA KGGLSELKSR LLFVLGAIIV FRLGSYVPIP GIDAAVLAEL FDQQKGTIVE
MFNMFSGGAL ERASVLALGI MPYITASIII QLLTVMHPPM MELKKEGEAG RRKISQYTRY
FTLVLATFQA IGIATNLPNL ISGLVINPGF GFYFTAVVSL VTGTMFLMWL GEQITERGIG
NGISILIFAG IVSGLPTAIG QTAEQARQGD LNLLFLLLIG VIIIAITYFV VFVERGQRRI
VVNYAKRQQG RKVFAAQSTH LPLKVNMAGV IPPIFASSII LFPGTIANWF GQNESFSWLQ
EVALMLSPGQ PLYVMFYAAA IIFFCFFYTA LVFNPRETAD NLKKSGAFVP GIRPGEQTSR
YVDKVMTRLT LAGALYITFI CLVPEFMLIA WNVPFYFGGT SLLIMVVVIM DFMAQVQTHL
MSHQYESVLK KANLKGYGR
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