Gene Patl_1004 details

Gene Information

• Locus tag: Patl_1004
• Symbol: rplF
• ID: 4171980
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 1194086
• End bp: 1194619
• Gene Length: 534 bp
• Protein Length: 177 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 638054005
• Product: 50S ribosomal protein L6
• Protein accession: YP_660584
• Protein GI: 109897329
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03654] ribosomal protein L6, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.00326754
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCACGTA TAGCAAAAGC TCCTGTAGAC GTTTTATCTG GCGTAGAAGT TACTATCGCT 
GGGCAAGAAG TCACAGTAAA AGGTAAAAAC GGTACATTAA GCCGTGTATT CAACGATGCA 
GTTGAAGTTG TTCAAGAAGA GAACCAACTT AAAGCCTCAC CTCGTGAAGG TGTTGCCAAT 
GGTTGGGCTC AAGCTGGTAC AGCTCGCTCA TTGTTAGATG CAATGGTAAT TGGTGTATCT 
CAAGGTTTTG AGAAAAAACT TCAGTTGAAT GGTGTTGGTT ATCGTGCGGC AGCGCAGGGT 
AAAAAACTAA ATCTAACGCT TGGTTTCTCA CACCCTGTAG CATACGAAAT GCCCGAAGGT 
ATTTCGGTTG AAACTCCTAG TCAAACTGAA ATCGTCGTTA AAGGCGCCGA TAAGCAGTTG 
GTAGGTCAGG TTGCAGCTAA CATCCGTGGA TACCGTCCGC CAGAGCCTTA TAAAGGTAAA 
GGTGTTCGTT ACGCTGATGA AGTTGTGCGT CGTAAAGAAG CTAAGAAAAA GTAG 

 

Protein sequence

MSRIAKAPVD VLSGVEVTIA GQEVTVKGKN GTLSRVFNDA VEVVQEENQL KASPREGVAN 
GWAQAGTARS LLDAMVIGVS QGFEKKLQLN GVGYRAAAQG KKLNLTLGFS HPVAYEMPEG 
ISVETPSQTE IVVKGADKQL VGQVAANIRG YRPPEPYKGK GVRYADEVVR RKEAKKK