| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0993 |
|---|
| Symbol | |
|---|
| ID | 4173495 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 1184240 |
|---|
| End bp | 1184938 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638053994 |
|---|
| Product | Sel1 repeat-containing protein |
|---|
| Protein accession | YP_660573 |
|---|
| Protein GI | 109897318 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCCGA TAAAAATGTT ATACGCCACA GCAGATAGAT TCCATATGAA AGTGTCACTC
CCTAAATTGT CTCATGCTGG CCTACTGGCT GGACTGCTTA TTTTAACTAC CTCTGGTATG
TCTACTAGCC GCGCTGCAGA CGAAATCAAA GCGGTGCAAC TCTATTCCCA AGATGAGTTG
CTTCGGCTCA TTCACCGTAA TGAGCATTTA AGCCAAGTTG TGTTAGATGA TTGTCAATTA
GTGCAAGACA TTGAGGCCAG AGCGCAAACC TTAAAAATAC CTGCCTATCA GTTTTTATGG
GGTGACATGC TTGCTTGGGG GGTATGCGTA ACTGCTGAGC CTGAGCGTGG TATTAGCTTT
ATGCGTCAAG CTGCCGACCA AGGTTTACCA GAAGGGCTAG AGCAGCTGGG CCGTTATTAT
GCTCAAGGCA AGTTAGTGCA GCAAGATAAA GAGCGCGCGG TGGTGTTTTT ACGCGAAGCA
TCAATGTTGG GTAACCAAAA AGCGCAAATA GAGTTAGTGG AATTGTTCAT AGATGGTTAT
GGCAGCCCTT ACGATTATGA AGATGCTTAC CATTGGTTGT ATAACGCAGT GACGAACGAT
AAGAAAACCC ATCAAAAAAT TGCGTCTTGT TTGTCTGATC TAGAAAAACT GATGCATCCT
AAAGCGGTAC GTAAAGCGAA ACGTCCTTTG GATTCATAA
|
|---|
| Protein sequence | MLPIKMLYAT ADRFHMKVSL PKLSHAGLLA GLLILTTSGM STSRAADEIK AVQLYSQDEL
LRLIHRNEHL SQVVLDDCQL VQDIEARAQT LKIPAYQFLW GDMLAWGVCV TAEPERGISF
MRQAADQGLP EGLEQLGRYY AQGKLVQQDK ERAVVFLREA SMLGNQKAQI ELVELFIDGY
GSPYDYEDAY HWLYNAVTND KKTHQKIASC LSDLEKLMHP KAVRKAKRPL DS
|
|---|
| |