| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0934 |
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| Symbol | |
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| ID | 4172141 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1113913 |
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| End bp | 1114839 |
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| Gene Length | 927 bp |
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| Protein Length | 308 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638053935 |
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| Product | TRAP transporter solute receptor TAXI family protein |
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| Protein accession | YP_660514 |
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| Protein GI | 109897259 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTAAGA TTTTAAAGAA TGGGATCCTA GGGTTAACGT GTTTGTTTTC ACTTAACACC
ATAGCGGAAA CTTATACTAT TGGTACTGGT AGCCAGAGCG GTACCTATTA TCCACTTGGG
GGTATGCTAG CCAAGGTCTG GAGCGAAAAT ATTGAAGACT TTGATATGCG AGCTGAAGTG
ACGGCCGCTT CCGTAGAAAA TACCATCAAA GTTGCTACAA AAAAACAACT CGCAGGGATA
GCCATGGGTA ATGTGGCTTT ACAAGCACAT GAAGGCGTTA AGCCTTTCCC TCGAAAAATG
GATGTATCCG TTTTATTTGC TTTATATCCA AATGTAGTTC AATTCGTTGT ATCAGCGGAC
TCAGATATAC ACACAATTCA AGATTTAAAA GGTAAACGTA TTTCATTAGG TGCACCAGGC
TCTGGTACAC GCGTGAGTGC AACTAATATT CTTTTAGCTT TAGGCATAAG AGACAATGAT
ATTGATGCCC AATCTCTAAA TTACACTGCA ACCACTAATG CTATTTCTGC CGGTCAAATT
GATGCAGGTG TAATCGTAGG CAGCATAGGT GTTGGGGCAA TCACTGAATT GGCGTTCACT
CATAAGATTC GAATTCTATC GTTTACACCA GAAGAGCTTA AAGCTGTCTC TGATAACAAT
GCTTCATATC AAGCAATTGA AGTAGCAGAA GAAAGCTACA AAGGTGTTAC CGCATTTAGG
GCACCAGCGG TATGGAATAT TCTTATCGTA AACAAAGCTC TTGATACCGA CCTTGCTTAT
CAAATGACAA AAGTTGCTTT TGAGAACATG AAAAAAATCA ATCAGGTTAT TAGCGTCACA
AAATATACGA CGCTTGAAAA TATGAACAGG CTAGACGGAA TCGACTTACA CCCAGGTTCG
TTAAAATATT TAAAAGAACA AATGTAA
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| Protein sequence | MSKILKNGIL GLTCLFSLNT IAETYTIGTG SQSGTYYPLG GMLAKVWSEN IEDFDMRAEV
TAASVENTIK VATKKQLAGI AMGNVALQAH EGVKPFPRKM DVSVLFALYP NVVQFVVSAD
SDIHTIQDLK GKRISLGAPG SGTRVSATNI LLALGIRDND IDAQSLNYTA TTNAISAGQI
DAGVIVGSIG VGAITELAFT HKIRILSFTP EELKAVSDNN ASYQAIEVAE ESYKGVTAFR
APAVWNILIV NKALDTDLAY QMTKVAFENM KKINQVISVT KYTTLENMNR LDGIDLHPGS
LKYLKEQM
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