Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0842 |
Symbol | |
ID | 4173983 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 992448 |
End bp | 994088 |
Gene Length | 1641 bp |
Protein Length | 546 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638053845 |
Product | Alpha-L-arabinofuranosidase |
Protein accession | YP_660424 |
Protein GI | 109897169 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3507] Beta-xylosidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.122484 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACAACC TACTAAAACG TTTTTCGCTG CTTGTTTTTA TTCTGTCTTT CAGCCCGTTG ATCTATTCAG CTACCGATAA TTTCAAAAAT CCGATCCTTT CTGGGTTTTA CCCCGACCCT TCAATAACTC GCTCTGGTGA TACCTATTAC ATGACGAACT CAACGTTTGA ATGGTTCCCA GCCCTGCCTA TTCATAAAAG CAAAGATCTC GTTAACTGGG AGCTCGTTGG CTATGGCATC AGTGACGCTA CGCATTTGAA CCTACAAGAA GGACTAAATG ACTCATTGGG TATTTTTGCG CCTACCATTA GGTATCACGA CAACACATTT TACATTATTA CGACCTGTGT AGGTTGCGGT GGCAACTTTA TTATCACAGC CAAAGATCCC GCAGGTCCTT GGAGTAAACC CACATGGCTT AAAGGCGCGA TAGGCATCGA TCCATCATTG TATTGGGAGG ACGGTAAGAG CTATTACCTT GGCGCGGGCT TATTAGAAGC GGAAGACAAA ACACAGTGGC CGGGGAAAAA TGGTATTTGG ATGCAAGAGA TTGATATCGA ATCAGCCAGC CTGCTGGGCC AACCAAAGCA ATTAACCTTT GGCCACGCTG CGAATGCCCG CTGGGCTGAG GGGCCGAGGT TATTTAAGAT TGATGGCGAA TACATGTTAC TGATTGGTGA AGGAGGAACA AACGAGTTTC ACGCCGTGAC GGTTTTCAAT AGCCAGTCTC TTTGGGGTCC ATATGTGCCC AATCATGCCA ATCCCGTGCT AACCCATCGT CATTTACAAA ATACTTATCC TATTGCTCAA ACCGGCCATG CTGATTTAGT GCAAACCCAA GATGAACAGT GGTGGTCTGT GGTACTTGCC AAACGCCCAC AAGAAGGCAT TACCCTACTC TCCCGAGAGA CATTTCTAGC CAAAGTGGTT ATGAGTAGAA ATGAAAGTGG TGTCACTCCT ATCTTTAACC CAGGGGTAGG ATTACTGCAA CCAGAGCAGC CAAGACCAAA TTTACCGTGG ACACCTGTTC AGCAAGAGGC GGCGCGGGAC GAGTTTAATG CTAATGAATT GTCGCTACAG TGGAATTTTT TACGTACCCC TAGCAAGCAA CGGCACGCGC TAGAGGCTGG TGCTCTTCAC TTAGCGTTGG CACCTCAGCG CATCGAAGAT TTAGCTAATC CCGCGTTCGT TGCTAGGCGC ATTAAGCACC ATAGTTTTCA CGCCTCAACT GCGCTTAATT TCTCCTCGAC CAAGCAAAAT GAAAAAGCAG GGTTGGTGCT ATACCGAAGG TCGACCAATC ATTATCAACT GCTTAAACAG GCAAATGAAC TCGTGTTACA AAAAACGAGT AAACGAGCAG AAAACGGAAA GTTAATAGCG ACAGAAATCG CTCGCGTACC TTATACACAT GACTCTATTA TCATGCGCGT TGATGTAAAT AATAATATGG CTCAATTTAG CTTTGGCCAG AATGAATCCC AGTTAGCACC TATCGGTGCG CCTCAAAGCG TAAGTATCTT GTCTGATGAA GTAACTCAAA GATTTAATGG TAACTATGTT GGCATGTACG CCACCAGTTC AGGGCTCGTC AGCAAAGCTC AAGCACAATT TAATTGGTTC GAGTATTCAC AAAAGAACTA A
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Protein sequence | MNNLLKRFSL LVFILSFSPL IYSATDNFKN PILSGFYPDP SITRSGDTYY MTNSTFEWFP ALPIHKSKDL VNWELVGYGI SDATHLNLQE GLNDSLGIFA PTIRYHDNTF YIITTCVGCG GNFIITAKDP AGPWSKPTWL KGAIGIDPSL YWEDGKSYYL GAGLLEAEDK TQWPGKNGIW MQEIDIESAS LLGQPKQLTF GHAANARWAE GPRLFKIDGE YMLLIGEGGT NEFHAVTVFN SQSLWGPYVP NHANPVLTHR HLQNTYPIAQ TGHADLVQTQ DEQWWSVVLA KRPQEGITLL SRETFLAKVV MSRNESGVTP IFNPGVGLLQ PEQPRPNLPW TPVQQEAARD EFNANELSLQ WNFLRTPSKQ RHALEAGALH LALAPQRIED LANPAFVARR IKHHSFHAST ALNFSSTKQN EKAGLVLYRR STNHYQLLKQ ANELVLQKTS KRAENGKLIA TEIARVPYTH DSIIMRVDVN NNMAQFSFGQ NESQLAPIGA PQSVSILSDE VTQRFNGNYV GMYATSSGLV SKAQAQFNWF EYSQKN
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