| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0801 |
|---|
| Symbol | |
|---|
| ID | 4173114 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 924263 |
|---|
| End bp | 925687 |
|---|
| Gene Length | 1425 bp |
|---|
| Protein Length | 474 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638053804 |
|---|
| Product | L-fucose transporter |
|---|
| Protein accession | YP_660383 |
|---|
| Protein GI | 109897128 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0738] Fucose permease |
|---|
| TIGRFAM ID | [TIGR00885] L-fucose:H+ symporter permease |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAGCG GGATGGAGCA GACAGCCGAA GCGGTATCAG TACAGAAAAA CCAGGGGAGC
AAACCCCAAA TATTAGAAGC AAAATATATT GTCCCATTCC TGTTGGTTGC CTCGCTATTT
CCGTTATGGG GCTTTGCAAA TGACGTGACT AACCCATTAG TAAAAGCGTT CAAAGATATT
TTCATGATTT CTAACGCGCA AAGTAGTTTG GTGCAATTTG CCTTCTACTT GGGCTACGGA
GTGATGGCAA TACCTGCGGC AATTTTTATT CGTCGATTCT CATATAAATC CGGTATTTTG
CTCGGCTTAG GGTTATACGC CATTGGCGCT AGTCTCTTTA TACCCGCATC GATATACATG
GAGTTTTCTT ACTTTTTAGC GGCATTGTGG ATCTTAACAT GCGGTTTGGC GTTACTAGAA
ACAACGGCCA ATCCTTACGT GTTGTCTATG GGACATCCCG ATACATCGAC TCAGCGTTTG
AACTTGGCTC AAGCGTTTAA TCCTATCGGC TCATTAACAG GTATGTTCGT CGCCAGTAGC
TATATTCTTA GTGAGCTACG GGTTGAAGCT TTTAGAGAGC AAGAAAAAGC CGCTCACCCA
GAGTATGCGC AAATGTTGCC ATCAGAGGTC GACGGCAAGT TAACCAATGC ATTATATGAC
TTTGCGCAAA ACAATCCGGT AGAGCATCAG GCGATGCAAG CGGCTGATCT CATTACTGTT
CGTGGGCCGT ATGTGGCTAT TGCAGTTGTG GTTGCGATTG TGTTCTTTGT ATTTCTACTA
AGTAAATTGC CTAAAACCAT GGCGCATGCG ACGCCCTTAA CCACGTCTGA ATTAAAGAAC
ACATTTCAGC GCTTATTTGC CAACAAATGT TATTTAGAGG GCGTGATCGC GCAAGCTTTC
TATGTTGGGG CACAAATCAT GTGCTGGACG TTCGTTATTC ATTACGGCAT GACATCAGTA
GGGCTAAGTG CCTCTGAAGC ACAAAGCTAT AACATGGTGG CCATGGGAAT ATTTTTGGCT
AGCCGCTTTA TATGTACATT TTTACTCGGT TTCTTTAGGC CCGGGCAGCT GTTGATGTTG
CTTGCTTTAG GTGGGTTTGT TTTGTCCCTA GGGACTATCT TCGTCGGAGG GTACACAGGG
TTGTACTGCT TAATTGCTAC CTCAGCGTGC ATGTCGTTAA TGTTCCCAAC CATTTACGGT
ATTGCGCTCA AAGGAATGGG CGAAGATGCT AGCCTAGCGT CGGCTGGTTT AGTGATGGCA
ATAGTCGGTG GGGCGCTTAT GCCTCCCATC CAAGGCTCTA TGATTGATGG CGCTGCGCTT
ATCGACGGCA TCCCGTCAGT GCAAACGTCA TTCGTGCTGC CGCTCATTTG CTTTGCAATG
ATATGCCTGT ACGGATATCG CGCTCACTAT AAGTATGGTC GATAA
|
|---|
| Protein sequence | MSSGMEQTAE AVSVQKNQGS KPQILEAKYI VPFLLVASLF PLWGFANDVT NPLVKAFKDI
FMISNAQSSL VQFAFYLGYG VMAIPAAIFI RRFSYKSGIL LGLGLYAIGA SLFIPASIYM
EFSYFLAALW ILTCGLALLE TTANPYVLSM GHPDTSTQRL NLAQAFNPIG SLTGMFVASS
YILSELRVEA FREQEKAAHP EYAQMLPSEV DGKLTNALYD FAQNNPVEHQ AMQAADLITV
RGPYVAIAVV VAIVFFVFLL SKLPKTMAHA TPLTTSELKN TFQRLFANKC YLEGVIAQAF
YVGAQIMCWT FVIHYGMTSV GLSASEAQSY NMVAMGIFLA SRFICTFLLG FFRPGQLLML
LALGGFVLSL GTIFVGGYTG LYCLIATSAC MSLMFPTIYG IALKGMGEDA SLASAGLVMA
IVGGALMPPI QGSMIDGAAL IDGIPSVQTS FVLPLICFAM ICLYGYRAHY KYGR
|
|---|
| |