| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0776 |
|---|
| Symbol | |
|---|
| ID | 4174110 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 888142 |
|---|
| End bp | 890079 |
|---|
| Gene Length | 1938 bp |
|---|
| Protein Length | 645 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638053778 |
|---|
| Product | DNA topoisomerase III |
|---|
| Protein accession | YP_660358 |
|---|
| Protein GI | 109897103 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0550] Topoisomerase IA |
|---|
| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000730539 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCCTAT ATATAGCGGA GAAGCCCAGT TTAGGCCGTG CAATTGCGCA AGGCTTCAGC
GGTCAGCAAC AAAAGCATGA TGGCTATATC ACCCTAGGAA ATGGCGATTG CGTCACTTGG
TGTATAGGTC ATTTGCTGGA ACAAGCTGAG CCTGATAAAT ACGACCCTGC TTACGCAAAA
TGGGCTTTGC AGCACCTGCC TATCGTGCCG CAAGATTGGA TATTGGTACC CAAAAAAGGC
ACCAGCAAAC AGTTATCGGT CATAAAACGT TTATTGAAAA CAGCATCTCA GGTGGTCAAC
GCGGGGGATC CAGACCGTGA AGGTCAGCTT TTAGTGGACG AAGTCATCAC CTACTGCAAA
GTTAAGCGCG ATATTATCGA TAACGCTGGG CGTTTACTGA TCAATGATTT AAACCTAAAC
GCAGTTAAAA AATCCTTAAC TAATATTCGC CCCAATCGTG AATTTACTGG CTTGTCCATC
TCTGCCCTTG CACGCTCAAG AGCGGATTGG TTATATGGGC TTAACTTAAC CCGTGCTTAC
ACTCTGCTCG GCCAGCGCGG CGGCTACTCA GGTGTGCTGT CGGTCGGCAG AGTACAAACC
CCAGTACTGG GTTTAGTGGT CAGGCGGGAT GCAGAAATAG CCCAGTTTAA ATCGAAACCC
TTCTATGAAG TCATGGCGAC GCTCGCCACT CAAACCGAGC AACCATCCCA AACGTTCACA
GCAAAATGGC AGCCAAGTTC AGCTTGCGAG CCTTATCAGG ATGAAGAAGG TCGCGTGATT
GTTAAGAAAC TCGCAGAAAC CGTGGTCAAT AAAACGCGGG GCCAACCGGG TGTCGTTGAG
TCTTATACGG TGAAGGATAA ACAAAGTCCG CCCCCCCTGC CCTATAACCT GTCGGCGCTG
CAAATTGATG CGTCGAAACG CTTTAACTTG TCACCTAAGG CAGTGTTGAC TGTGTGCCAG
TCTTTGTACG AGCGTCACCA GTTAATCACC TACCCCCGCT CTGATTCGCG TTATTTACCC
ATGGAGCATT TCAGCGAAGC GACAAAAGTA TTAAGCGCCA TTAAAGCCAA TGCACCAGAG
CAGCAAAGTG CCGTGGAGAA TGCGAATAGT AAATTGAAAT CAAAAGCATG GAACGATAGC
AAAGTAGATG CTCACCATGC GATTATTCCC ACCTCTCGCA ACAAGGCCAT ATCAAGCTTA
AGTGGCGATG AGGCGAAAAT TTATCAATTG ATTGCTACCC AGTACATCAT GCAGTTTTAT
GGCCCCCATA AGTATCAAGA ACAAGTAGCC GTGGTGACGA TCGCTGGGGG GACCTTTGTA
GCCAAAGCAA AAGCCACCAC AGATAAGGGC TGGTTGGTAT TAACCAAGCA AAACGGCGTA
GCGATCCCAG AGAACGGCCA AACAAAAAAC GAACCTGCAT TACCAACCCT GGTGAAAGGC
CAAGCGCTCG ATTGTGTTGA CTCTCAGCTA GTGGAAAAGC AAACCTCGCC CCCTAAACAC
TTCACCGAAG CGACCTTACT TGCCGCCATG ACAGGCATCG CCCGCTATGT GCAGGACGCT
AACATCAAGA AAATTCTTAA AGACACAGAC GGTTTAGGCA CAGAGGCAAC CAGAGCCTCG
ATTATTGATT TATTGTTTAA ACGACAGTTT ATGCAAAAAA GTGGCAAGGA AATACACGCC
ACACCCACGG GCAAGGCGCT GATATATGCC CTGCCCAGCG AATCAACCCA ACCCGATATG
ACCGCTATAT GGGAGGCCAA TTTGGATAAA ATTTCCCAAC GTAAAATGCG TTATCAAGAT
TTTATGCAAC CTCTTACGCA CACCATTGGC GAGTTAATTA ACGCCAGTCA GCGCATCGAT
ACCAGTCAGT TTGCAGGCCT TGCCTCAACC AAACCTGCGT ACAAAAAGAA GTGGCGTAAG
AAGAAAAAGG CCAGTTAG
|
|---|
| Protein sequence | MILYIAEKPS LGRAIAQGFS GQQQKHDGYI TLGNGDCVTW CIGHLLEQAE PDKYDPAYAK
WALQHLPIVP QDWILVPKKG TSKQLSVIKR LLKTASQVVN AGDPDREGQL LVDEVITYCK
VKRDIIDNAG RLLINDLNLN AVKKSLTNIR PNREFTGLSI SALARSRADW LYGLNLTRAY
TLLGQRGGYS GVLSVGRVQT PVLGLVVRRD AEIAQFKSKP FYEVMATLAT QTEQPSQTFT
AKWQPSSACE PYQDEEGRVI VKKLAETVVN KTRGQPGVVE SYTVKDKQSP PPLPYNLSAL
QIDASKRFNL SPKAVLTVCQ SLYERHQLIT YPRSDSRYLP MEHFSEATKV LSAIKANAPE
QQSAVENANS KLKSKAWNDS KVDAHHAIIP TSRNKAISSL SGDEAKIYQL IATQYIMQFY
GPHKYQEQVA VVTIAGGTFV AKAKATTDKG WLVLTKQNGV AIPENGQTKN EPALPTLVKG
QALDCVDSQL VEKQTSPPKH FTEATLLAAM TGIARYVQDA NIKKILKDTD GLGTEATRAS
IIDLLFKRQF MQKSGKEIHA TPTGKALIYA LPSESTQPDM TAIWEANLDK ISQRKMRYQD
FMQPLTHTIG ELINASQRID TSQFAGLAST KPAYKKKWRK KKKAS
|
|---|
| |