| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0732 |
|---|
| Symbol | |
|---|
| ID | 4172189 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 830725 |
|---|
| End bp | 833514 |
|---|
| Gene Length | 2790 bp |
|---|
| Protein Length | 929 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 638053734 |
|---|
| Product | UvrD/REP helicase |
|---|
| Protein accession | YP_660314 |
|---|
| Protein GI | 109897059 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAGGA ATGATAAAAA TTTGATGTTT TCAGATATTG AAAATAACCT GTGGAGTAAC
AAATTTGCAC TCAAAAATAA CAGTCATGTA GATACTGACT TGAATGCTGT TTATCAATCG
TTTATTAATA ACGGAACACT AAGCTATAAA GATGAACCAA AATCGTTAGT GAAGTTGCTA
CAGGATCCAA AGCACGCAAA GTACCAATCT AAGTTGTTGA GTAGATATTT TGAAGAGCCA
GAAAAATATC TAAAACTTGA TTGTGATTAT CTATCTATTC AAGTGGATTG CTCTCAAGCT
AAAACTGTTG AACTATTTAC AAATAACGAT ACTGGGCTAC TAAAGCCGAG ATCCAATGCA
CTACGTGAGA TTTTAACAAT CCGCCATGAG CCATGGGTTC ATAAAGCGAA TAACGGTCTT
ATGAGTAAGG AAAATAGTGA GGGTGAGCGA TATCCAAAAG CTCCGATTTT TACATCTGTT
TATCGAATAA AACTATTCAA TGATAGACGC AAGTTTTTCT ATATCTATAT CGCTGATGGG
ACTAAGGGTC TAGAAGGTAA AAGAGTCCAG ATTGATTTTA TTCCAAGTCG ATTCACAGAC
CTTGAACTCA GTATCCTATT CGGACACATC AAGTCAGTAC TGAAAAAAAG AGCCTACTCA
CAGTTTATTG CAAAAGCGAG ATACAAGAGG GTTGATATAG CTTTTAACAT GCCAGGTGTA
TTTCAACCGT TCGTGTTTCC TGCATACTTT GCTATCAATA GTATTTCGAC GGGCTCCTGC
TGGCCTTTGG AAAAGCTTGT TGAAACATGC TACATAGGTA ATAGGAGAAG CAATCACTAC
ATCGTGTACG ATAAAATATT AAAGGAGATG AAGACAGACA TTACCTTTTT TTTGATTGAA
CATGCTGAAG TACAACAGGC TATGAAAAAG CTAGCAATGG TCACTCGCAT CGAAAGACGT
TTCTATACAA ACCGTGCAGG TCACAATAGC AAGTTGTTTC AGAAAACCAT CCCGCTATCG
GACCTACCTA CTCAGACAAT GCCACTGGAT GAAATTGCAA TAATAGATCC AATTGTAATG
CGAAAAATTG ATAGAAAGCT TCTTTTAAAA ACTATTCAAG AGAAAAGTCG TTGGCAGGAT
GGCGGTAATA AAGAAGCAGC TACTCGCCAA ATAAATGAAG AGCTTGAAGG GACCAAGGTG
TTTCGGCTAG ATGAAACAGT GTTCAATACA ATGAAAACAA AGCTGCTAAC CGATTTATTG
GAGACTATCC AAAACCCTAC TATTATAAAG ACAGATGAAC TTATTAAATT AATAAAATTC
AATCACTTAA AGAAAAGTAT CGAATTACCA CTACCGTTAA CAAAAGTTAA AAAAATTTCA
AAAGCTTATA AATCAGAGCA CCACAACATA GTAGTGAAGT CTGGTGCTGG TTGCGGTAAG
ACGAGAGAAA TAGTAAAGCG AGTAGTTTGG CTCATAAGTG AGAAAGACGT TGATGCTAAT
AAAATTACTA TACTGGCTTA CACAAATGAT GCGGTAAAAG AGCTTAAACA GCGAATAAGA
AAAAAACTCG AAAAGCTAAA GCCGCTAAAC GGAAAAGACC GTTTTGAACT TCCAAATATC
AAGACATTTA GTGCTTGGTG TGGTCAGCAA TTGAAACGAC ACGATAAAAA GCAATATGGC
TCAAGTACTT ATATGCCGTC AGAGAAAGAA AAAGGCGCTT TAACTAAGAC CAGAGAATAC
TATTTGCGTA ACATAGTTGC TTCTAATTCG ACGATTAAAG GCAAAGCAGA AGATTATGAT
AGATTGTTCT CATTTAGTGC TAATGATTGT AAGCCAAATC TTGGTAACCT AATTGATTCT
ATTAGCTCAA GACGTTCTAA AAAGTTAAAG GTTAACGCTA AAGATGCACG AACCGTTTAC
GTCGCCTATA AGAAATTGAA AGAAAAACAT TCTCTATGGG ATTTCGATGA TGTTTTGACT
TTTATGAACA AGCGCATGAA AGTTCCAAAA TTCTCCAACA AAGTATCTGA TGGTTGCGAG
CATCTAATTT TAGATGAAAT GCAAGACTCC AATTTGGTGC AGTGGCAGAT CCTCGAGAAG
CTATCAGCAG CAGGCATAAA GTTATTTTGT GTTGGAGATA CAGCTCAATC GATATTTGGA
TTTAGAGGTG CTCGTCCGGC TAGGTTTGAA AATTATGCAG AGAACACAGA AGTTAAGCGC
TTTACCTCAA GACATAGCTA TAGGTCTACC AGTCGAATTC TTCGACTCAC TAACTTTGTC
CGACGTTACA CTCAATCGTT ACCAAAAAAA CTAACAACCG GAAAATCAGA AGGAGATGCA
CCGGAACTTA TCGAGCATGA TGATTTGCAA GGACTTGTTA ATGACTTAAC AAGTAAGTTG
ACTCAGTTGT TAGAAAGATC GCACAAGACA GAGGCAATAC TCATTTTAGC TAGGACAACT
AAGGTAGTTG ATACGATAAG CGATGCAATT ACTTTGGCGC TTAAAACCGA AAAGTATATG
CCACTGTTGA AAAGAATTTC TGTAATGACG ATGCATAAAG CGAAAGGACT AGAAGCCGAT
GTTTGTTTTG TGGTCGATCC TCGCTATTCT CGCTCATCAT ACGACACCAA AGATGAGTAT
CTAAGGCTTA TATATGTTGC TCTGACTCGA GCGCGCACAA AACTTATAAT TTGTCGCAAA
AACACCTCAG TCAATTTTTA TACAGATGGT CAGGAAGGTG AACCGGATAT CATTGATATT
CTGAAAGAGA ATACGTTTTT GTTTGCGTAA
|
|---|
| Protein sequence | MTRNDKNLMF SDIENNLWSN KFALKNNSHV DTDLNAVYQS FINNGTLSYK DEPKSLVKLL
QDPKHAKYQS KLLSRYFEEP EKYLKLDCDY LSIQVDCSQA KTVELFTNND TGLLKPRSNA
LREILTIRHE PWVHKANNGL MSKENSEGER YPKAPIFTSV YRIKLFNDRR KFFYIYIADG
TKGLEGKRVQ IDFIPSRFTD LELSILFGHI KSVLKKRAYS QFIAKARYKR VDIAFNMPGV
FQPFVFPAYF AINSISTGSC WPLEKLVETC YIGNRRSNHY IVYDKILKEM KTDITFFLIE
HAEVQQAMKK LAMVTRIERR FYTNRAGHNS KLFQKTIPLS DLPTQTMPLD EIAIIDPIVM
RKIDRKLLLK TIQEKSRWQD GGNKEAATRQ INEELEGTKV FRLDETVFNT MKTKLLTDLL
ETIQNPTIIK TDELIKLIKF NHLKKSIELP LPLTKVKKIS KAYKSEHHNI VVKSGAGCGK
TREIVKRVVW LISEKDVDAN KITILAYTND AVKELKQRIR KKLEKLKPLN GKDRFELPNI
KTFSAWCGQQ LKRHDKKQYG SSTYMPSEKE KGALTKTREY YLRNIVASNS TIKGKAEDYD
RLFSFSANDC KPNLGNLIDS ISSRRSKKLK VNAKDARTVY VAYKKLKEKH SLWDFDDVLT
FMNKRMKVPK FSNKVSDGCE HLILDEMQDS NLVQWQILEK LSAAGIKLFC VGDTAQSIFG
FRGARPARFE NYAENTEVKR FTSRHSYRST SRILRLTNFV RRYTQSLPKK LTTGKSEGDA
PELIEHDDLQ GLVNDLTSKL TQLLERSHKT EAILILARTT KVVDTISDAI TLALKTEKYM
PLLKRISVMT MHKAKGLEAD VCFVVDPRYS RSSYDTKDEY LRLIYVALTR ARTKLIICRK
NTSVNFYTDG QEGEPDIIDI LKENTFLFA
|
|---|
| |