| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0665 |
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| Symbol | |
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| ID | 4173320 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 767936 |
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| End bp | 769003 |
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| Gene Length | 1068 bp |
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| Protein Length | 355 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638053668 |
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| Product | 3-dehydroquinate synthase |
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| Protein accession | YP_660248 |
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| Protein GI | 109896993 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0337] 3-dehydroquinate synthetase |
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| TIGRFAM ID | [TIGR01357] 3-dehydroquinate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000291417 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAACAT TAACAGTGAA GTTGGGTGAG CGTAGCTACC CCATTTTTAT CCAGCCGAGT
TTGCTCACCC AAGGCAACCA ACTGGCAGAT TACATCAAGA CAGACAAAGC GGTATTGGTA
ACCAACGACC TAGTTGACCC GCTATACAGT CAAACCGTTA TTGACAGCTT ACCCAGTATC
AAGATTGAAA AAATTGTCAT TGCCGATGGT GAACAACACA AGAATCTGGC CAGCTTTGAG
CATGTGATCA CTCAGCTGCT TAGCATGTCT GCAGCGCGTG ACACTACGCT GATCGCTCTT
GGTGGCGGCG TTATTGGTGA TTTAACTGGA TTTGTCGCAG CAAGTTTTCA GCGTGGTATG
CCCTTTATTC AAATACCTAC CACCTTGTTA TCACAAGTTG ATTCATCGGT AGGTGGTAAA
ACTGCGGTTA ATCATCCTTT AGGTAAAAAT ATGATTGGCG CATTTTATCA ACCCAAAGCC
GTTTTTATCG ATACCAAAAC CCTGCAAACC TTACCAGCAA AAGAGTTCTC TGCCGGCATG
GCGGAAGTGA TTAAGTACGG TATTATCTAC GACAAAGCAT TTTTTGCATG GCTTGAGCAA
AACATTGCTC AACTTATCGC GCAAGACGTT GACGCCCTGC AATATTCCAT TGCGCGCTGT
TGTGAAATCA AAGCTGAAAT TGTCGCTATT GATGAGCGAG AGTCAGGACT TCGCGCCTTA
CTCAATTTAG GTCATACTTT CGGTCACGCC ATTGAAGCAG AGCAAGGTTA CGGCAATTGG
TTACACGGCG AAGCCGTCGC AGCAGGCATG GTACTCGCAG CGAAAGCAGG CCAAATGAAA
GGCTGGATGA GCAAAGAAGA AGTGCAGCGT GTTATTGCTT TAATAGAGGC ATTTTCATTA
CCTATCGCGC CACCAGCAAA TATGGGTTAT CAGACTTTCA TGCAGCACAT GGCACACGAT
AAAAAAGTGC AAGCGGGCAA ACTCAACTTC ATCGTACCTA AAGCAATTGG CGATGCGGTG
GTTACCTCTG AGCTAGATGA AACACTGTTG CGCTCATTGT TAGATTAG
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| Protein sequence | MTTLTVKLGE RSYPIFIQPS LLTQGNQLAD YIKTDKAVLV TNDLVDPLYS QTVIDSLPSI
KIEKIVIADG EQHKNLASFE HVITQLLSMS AARDTTLIAL GGGVIGDLTG FVAASFQRGM
PFIQIPTTLL SQVDSSVGGK TAVNHPLGKN MIGAFYQPKA VFIDTKTLQT LPAKEFSAGM
AEVIKYGIIY DKAFFAWLEQ NIAQLIAQDV DALQYSIARC CEIKAEIVAI DERESGLRAL
LNLGHTFGHA IEAEQGYGNW LHGEAVAAGM VLAAKAGQMK GWMSKEEVQR VIALIEAFSL
PIAPPANMGY QTFMQHMAHD KKVQAGKLNF IVPKAIGDAV VTSELDETLL RSLLD
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