| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0602 |
|---|
| Symbol | |
|---|
| ID | 4174090 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 691767 |
|---|
| End bp | 693872 |
|---|
| Gene Length | 2106 bp |
|---|
| Protein Length | 701 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638053605 |
|---|
| Product | translation elongation factor G |
|---|
| Protein accession | YP_660185 |
|---|
| Protein GI | 109896930 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0480] Translation elongation factors (GTPases) |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00484] translation elongation factor EF-G |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000132615 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCGTA AAACGCCTAT CAATCGCTAC CGTAACATCG GTATCGTGGC TCACGTCGAT
GCGGGTAAAA CCACGACGAC GGAACGTGTT CTTTTCTACA CCGGTTTGTC GCATAAAATT
GGTGAAGTCC ATGATGGCGC TGCCACCATG GACTGGATGG AACAGGAACA AGAGCGCGGT
ATCACTATTA CCTCGGCGGC TACGACCTGC TTTTGGGCAG GTATGGATAA GCAATACGAC
CAACATCGCA TCAACATCAT AGACACGCCT GGACACGTTG ACTTCACGAT TGAAGTTGAG
CGGTCTTTGC GGGTCCTTGA TGGTGCCGTT GTCGTATTTT GTGGTTCTTC CGGTGTAGAA
CCTCAATCAG AAACGGTCTG GCGTCAAGCT GACAAATATC ACGTCCCCCG GGTCGTGTTT
GTCAACAAGA TGGACAGAGC CGGTGCAGAT TTTGAACGAG TGGTTGGGCA AATTCGCAAA
CGACTCGGTG CTACCTGTGT TCCTATTCAC CTCAATATCG GTTCAGAAGA GAACTTCAGA
GGTGTTATCG ATTTGATTAA GATGAAAGCC ATCAATTGGA ATGAATCTGA TCAAGGCATG
ACATTTACTT ATGAAGGTAT CCCTGCTGAA TTGCAAGACA GAGCAGAAGC GCTACGTACT
GAACTTGTAG AAGCCGCCGC AGAAGCCAGT GACGAATTGA TGGACAAGTA TTTGGAAGGC
GAAGAGCTAA CCGAAGAAGA GATCAAACTC GCATTGCGCC AGCGTACAAT TAATAATGAA
ATTGTACTCG CTACTTGTGG TTCTGCTTTC AAGAATAAAG GCGTACAAGC GGTTTTGGAT
GCAGTAATTG AATTCTTACC TGCACCCGCA GACGTACCAG CTATCACTGG TGTGTTAGAT
GATAAAGATG AAACTGAAGC GACTCGTCCA GCAGATGACG AAGCTCCCTT TGCAGCTTTA
GCATTTAAAA TCGCTACTGA CCCATTTGTG GGGACTTTAA CATTTTTCCG TTGTTACTCT
GGTGTGGTTA ACACTGGTGA TAGCGTATAT AACCCTGTTA AAGCTAAGCG CGAGCGATTT
GGTCGTATAG TGCAAATGCA CGCGAAAGAT CGTGAGGAAC TCAAAGAAGT TCGAGCAGGC
GATATTGCTG CGGCAATAGG TCTCAAAGAT GTGACGACAG GTGACACCTT GTGTGACCCT
AACCATATCA TTACGCTCGA GCGGATGGAC TTCCCTGAGC CCGTTATTTC TATTGCAGTT
GAGCCTCGCT CACAAGCCGA TCAAGAAAAA ATGGCCTTAG CGTTAGGTAA ACTAGCGGCT
GAAGATCCAT CATTTAAAGT TAATACTGAC GAAGAGTCAG GACAAACAAT CATATCTGGG
ATGGGTGAAC TTCATCTTGA TATCATTGTA GATCGCATGA GGCGTGAATT TAGCGTCGAA
TGCAATGTAG GTAAACCTCA AGTTGCTTAC CGCGAAACCA TTCGTGGCAA AGTCGACGTT
GAAGGTAAGT TTGTTCGTCA ATCAGGTGGC CGTGGTCAAT TTGGTCATGT TTGGCTGACA
ATCGAGCCTA ATGAAGAAGG GGCTGGGTAC GAATTTATTA ACAATATAGT CGGTGGTGCA
ATTCCAAAAG AATTCATTCC TTCCGTTGAT AAAGGTATCC ACGAACAGAT GCAAAATGGT
GTGCTTGCAG GTTATCCGGT ACTTGATGTA AAGGTAACTT TGTTCGACGG TTCATATCAT
GATGTTGACT CTTCTGAAAT GGCGTTTAAA ATCGCTGGTT CAATGGGTTT TAGAAAGGGC
GCTGCTGAGG CAAAACCTGT ATTGCTTGAA CCCACAATGA AAGTTGAAGT TACCACCCCA
GAAGACTGGA TGGGTGATGT TGTTGGTGAT TTGAATCGCC GACGCGGTGT GATAGAAGGC
ATGGAAGACG GTGTCGCTGG GATCAAGATT GTTCTTGCGA AAGTGCCATT ATCAGAAATG
TTTGGATATT CCACTGACTT GCGTTCAGCT ACGCAAGGAA GAGCATCATA TTCAATGGAA
TTTTTTAATT ATTCAGAAGC GCCTAATAAT GTTGCGAAAG CCATTATTGA CGCTCGTCAA
TCTTAA
|
|---|
| Protein sequence | MARKTPINRY RNIGIVAHVD AGKTTTTERV LFYTGLSHKI GEVHDGAATM DWMEQEQERG
ITITSAATTC FWAGMDKQYD QHRINIIDTP GHVDFTIEVE RSLRVLDGAV VVFCGSSGVE
PQSETVWRQA DKYHVPRVVF VNKMDRAGAD FERVVGQIRK RLGATCVPIH LNIGSEENFR
GVIDLIKMKA INWNESDQGM TFTYEGIPAE LQDRAEALRT ELVEAAAEAS DELMDKYLEG
EELTEEEIKL ALRQRTINNE IVLATCGSAF KNKGVQAVLD AVIEFLPAPA DVPAITGVLD
DKDETEATRP ADDEAPFAAL AFKIATDPFV GTLTFFRCYS GVVNTGDSVY NPVKAKRERF
GRIVQMHAKD REELKEVRAG DIAAAIGLKD VTTGDTLCDP NHIITLERMD FPEPVISIAV
EPRSQADQEK MALALGKLAA EDPSFKVNTD EESGQTIISG MGELHLDIIV DRMRREFSVE
CNVGKPQVAY RETIRGKVDV EGKFVRQSGG RGQFGHVWLT IEPNEEGAGY EFINNIVGGA
IPKEFIPSVD KGIHEQMQNG VLAGYPVLDV KVTLFDGSYH DVDSSEMAFK IAGSMGFRKG
AAEAKPVLLE PTMKVEVTTP EDWMGDVVGD LNRRRGVIEG MEDGVAGIKI VLAKVPLSEM
FGYSTDLRSA TQGRASYSME FFNYSEAPNN VAKAIIDARQ S
|
|---|
| |