| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0578 |
|---|
| Symbol | |
|---|
| ID | 4174025 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 663416 |
|---|
| End bp | 664537 |
|---|
| Gene Length | 1122 bp |
|---|
| Protein Length | 373 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638053580 |
|---|
| Product | peptidase M28 |
|---|
| Protein accession | YP_660161 |
|---|
| Protein GI | 109896906 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2234] Predicted aminopeptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.43286 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCGT TATTGTATTT TGCGCTTTGC GCCTTGTTTG CAAGCTCGTC CTCCCTGCTA
GTACACGCAG CCCCTCTATC GACTGAAGAT TCAGCGCCTA ATACGTTAAT TGGCACAGGG
GCATTGACTC ACATTATTGC TCTGGCAGAT GACAAGAAGG GTATTGGGGC GAGGCCAGCA
GGCTCAAAAC AAGAACACCA AGCTGCGCAG TATATTTTTC AGCAATTACA AAGAGTGGGG
CTTAAAGCCG AGCAACAAAC ATTTGCCATT GAGGTAAACG AGAAACAGGC TACGTCGATA
AATATCAGTG CCGTGATCCC TGGGAAGTCG AAAAAAAGAA TAGTAATAGG CGCGCATTTT
GACTCCACAG GTGTTGAACA AGGTAGTTTA GGCGCAACGG ATAATGCCAG TGGCGTAGCG
GTATTGTTGG CAGTAAGCGA ACAATTAGTG CAAATGAAAG CGCTTCCTTA TAGCGTCCAA
GTGGTATTTT TCGGTAGTGA AGAGATCGGT AAGTTAGGCT CTAACTATTT TGTTCGCGCT
ATGCCTAAAG CTGAGCTGAA CAATATTATT GCAATGCTAA ATTTAGACAC CGTCATAGGT
GGCGATGTGT TGTATGTGCA TAGTAGTTCA CCCACTGATT TTAGTTGTAA GAAAATCGAA
AACGCTAAGC TAAACACCAG TGGTGTATTT AGAGATGCAC TTTTGGCTTA TGGCGCATCG
CAGCCCTCAT TGCCTGCTCG ATTTGAATTA CATGAAGATT CAGAGGTCTT TGCAGCAGGT
CAGACCGGAG ATTGGTCAGA TCATCAAGCA TTTGCCTGTA ACAATATCCC TATTGCGTAC
ATCGAAGCGA CGAATATGGA CATTAATGGG CGAGGGGGAA AAGATGGTTA CTCTCAATCC
ATTGAAGCGC AGTTCTGGAC ATGTTACTCA GGGAAAAAGA TAGGCAGCTG TGACCCGGAT
AACGAAAAAA AATGGGGAGA AATTTGGCAT ACCCAATTTG ACCGCTTAGA CCGACTTTCT
CCCGTTTTTA ATACGCGTAT GATGGAACAA CTTAAAGCCA ACATCACTCT TATCGTGGGA
GCGCTTAACG ATCCTAACAC CATGGCGAAG TTGGGTAAAT GA
|
|---|
| Protein sequence | MKPLLYFALC ALFASSSSLL VHAAPLSTED SAPNTLIGTG ALTHIIALAD DKKGIGARPA
GSKQEHQAAQ YIFQQLQRVG LKAEQQTFAI EVNEKQATSI NISAVIPGKS KKRIVIGAHF
DSTGVEQGSL GATDNASGVA VLLAVSEQLV QMKALPYSVQ VVFFGSEEIG KLGSNYFVRA
MPKAELNNII AMLNLDTVIG GDVLYVHSSS PTDFSCKKIE NAKLNTSGVF RDALLAYGAS
QPSLPARFEL HEDSEVFAAG QTGDWSDHQA FACNNIPIAY IEATNMDING RGGKDGYSQS
IEAQFWTCYS GKKIGSCDPD NEKKWGEIWH TQFDRLDRLS PVFNTRMMEQ LKANITLIVG
ALNDPNTMAK LGK
|
|---|
| |