| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0553 |
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| Symbol | |
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| ID | 4172240 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 643664 |
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| End bp | 645034 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638053555 |
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| Product | protease Do |
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| Protein accession | YP_660136 |
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| Protein GI | 109896881 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000923563 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTAAAG TTATTAACCG CACTGCCATT ACCAGTTGTG TTTTTGCGGC AAGCTTAATG
ATTGCCGGTT CAGCAAGCGC TGCCTTACCA TTCTTTTCTA GTGATAATGA GCCTGTCACA
AGCTTGGCTC CGATGCTGGA AAAGACCACC CCGGGGATCG TGACGATTTC CGTGGAAGGT
ACCCAGGTTT CGCGTCAGCA AGTGCCAGAA ATGTTTCGTC GCTTCTTTGG TGGTAACGGC
GAGCAAGTGC AAGAGCGCCC GTTCAAAGGT TTGGGGTCAG GGGTTATTAT TGACGCCGAC
AAAGGGTATG TCGTAACCAA TAATCATGTT GTTGAAAATG CAGATGAAAT TACGGTTAAG
CTAAACGACG GCCGCGAAGT CAAAGCGAAG AAACTTGGCG CTGATGAGCA AAGCGATATT
GCGTTACTTA AAATCGAAAC AGATAACCTC AACCTTACTG CGGTGCCACT AGCAGATTCA
GACAAGGTGC GTGTAGGTGA CTTTGTTGTG GCCATTGGTA ATCCCTTTGG TTTAAGTCAA
ACCGTTACCT CAGGTATTGT AAGCGCGCTA GGCCGTTCAG GATTAAACAT CGGCGGTTAC
GAGAACTTCA TCCAAACCGA TGCAGCCATC AACAGAGGTA ACTCTGGTGG TGCCTTGGTT
AGTCTTAATG GCGAACTTGT TGGCATTAAT ACCGCTATTT TTGGCCCTAA TGGCGGTAAC
GTAGGTATCG GTTTTGCTAT CCCTGCCAAT ATGATGAAAA GCTTGGTTGA TCAGATCATC
GAGTTTGGCG AAGTCCGTCG TGGCTTGCTA GGCATCTTAG GCCAAGATGT TGACTCAGGT
TTAGCTGAAG CCATGAACCT AGATGTAAGC CGCGGTGCGT TCGTCAGTGA AGTAAGCGAA
GGTTCTGCTG CTGATAAAGG GGGTATTCAA GCGGGTGATA TCATCATCGA AATTGAAGGT
CGCCCTGTGA CAAGCTTCTT AGAGTTGCGC GCTAAAATAG GCAGTAAAGG CGCGGGTACT
AAGGTCAACC TTACGTTGCT ACGTAAAGGT AAAGAGAAAG ACGTTCAAGT GACGTTAGGG
GATGCAACAC AGAGCACTGT GGCTGCTAAA GAAATACACC CAGCCTTAGA AGGCGCGACA
CTTACCAACG GTAAAACTAA GCAAGGTGTT GACGGTGTAG TTATTTCAGA ACTTGTCGCA
CGTTCACCAT CATCCTTGAT TGGTTTACAG GACGGCGATG TGATTATCGG CGTGAATCGT
CACAAAATTG ATAATGTAGT CGATCTACGT AACGCGCTAG ATGAAGCTAA GGGCGTGATT
GCGCTTAATG TTAAGCGTGG TGTATCAACA CTTTACTTGG TAATTCGCTA G
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| Protein sequence | MSKVINRTAI TSCVFAASLM IAGSASAALP FFSSDNEPVT SLAPMLEKTT PGIVTISVEG
TQVSRQQVPE MFRRFFGGNG EQVQERPFKG LGSGVIIDAD KGYVVTNNHV VENADEITVK
LNDGREVKAK KLGADEQSDI ALLKIETDNL NLTAVPLADS DKVRVGDFVV AIGNPFGLSQ
TVTSGIVSAL GRSGLNIGGY ENFIQTDAAI NRGNSGGALV SLNGELVGIN TAIFGPNGGN
VGIGFAIPAN MMKSLVDQII EFGEVRRGLL GILGQDVDSG LAEAMNLDVS RGAFVSEVSE
GSAADKGGIQ AGDIIIEIEG RPVTSFLELR AKIGSKGAGT KVNLTLLRKG KEKDVQVTLG
DATQSTVAAK EIHPALEGAT LTNGKTKQGV DGVVISELVA RSPSSLIGLQ DGDVIIGVNR
HKIDNVVDLR NALDEAKGVI ALNVKRGVST LYLVIR
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