Gene Patl_0548 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_0548 
Symbol 
ID4172235 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand+ 
Start bp639081 
End bp639635 
Gene Length555 bp 
Protein Length184 aa 
Translation table11 
GC content44% 
IMG OID638053550 
ProductGTP cyclohydrolase I 
Protein accessionYP_660131 
Protein GI109896876 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0302] GTP cyclohydrolase I 
TIGRFAM ID[TIGR00063] GTP cyclohydrolase I 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAGATG ATTTAACCCA GCATTACTCG CAAATTCTTT CGATCTTAGG TGAAGATACT 
CAGCGAGGTG GTTTAGTAGA TACGCCTAAA CGTGCCGCCA AAGCGATGCA GTTTTTGACC 
GATGGTTACG AGAAAAACCT TAATGACGTA GTGAATGGCG CTATTTTTGA AGCCGACACT 
GACGAAATGG TCGTTATTCA AAATATTGAA TACTATTCAC TGTGCGAGCA CCATATTTTG 
CCGTTTATTG GACAGTGCCA TATTGCTTAT CTACCTCAGG GGAAAGTGCT AGGACTATCT 
AAGTTTGCTC GCATCGTTGA CATGTACGCG CGTCGCCTGC AGATCCAAGA GGGTTTAACC 
AAGCAAATAG CGGATGCCAT TCAAGAAGTT ACTGGGGCGG CTGGTGTAGG CGTGATCATG 
GAAGGCAAAC ATATGTGCAT GATGATGCGT GGTGTTCAAA AGCAAAACTC GTCCATGGTG 
ACATCAGTAA TGCTAGGTGC GATGCGTAAG TCAGATGCAA CACGTAATGA ATTTCTTCGT 
TTAATTGGTA AGTAA
 
Protein sequence
MSDDLTQHYS QILSILGEDT QRGGLVDTPK RAAKAMQFLT DGYEKNLNDV VNGAIFEADT 
DEMVVIQNIE YYSLCEHHIL PFIGQCHIAY LPQGKVLGLS KFARIVDMYA RRLQIQEGLT 
KQIADAIQEV TGAAGVGVIM EGKHMCMMMR GVQKQNSSMV TSVMLGAMRK SDATRNEFLR 
LIGK